Classes
class	ButtonsBar
	Standardised horizontal bar with padded components, which are meant to be JButtons. More...

class	CompatibilityMatrixForm

class	CuttingRulesSelectionDialog
	A modal dialog to define parameters for fragmentation and fragment filtering. More...

class	DNPSpringLayout
	This layout extends the SpringLayout to change its behaviour. More...

class	FitnessParametersForm
	Form collecting input parameters for a setting-up the fitness provider. More...

class	FragmentViewPanel
	A panel with a molecular viewer and attachment point table. More...

class	FSEParametersForm
	Form collecting input parameters for a combinatorial/virtual screening experiment performed by FragSpaceExplorer. More...

class	FSParametersForm
	Form collecting input parameters for defining the fragment space. More...

class	FSParamsDialog
	A modal dialog to define a fragment space and load it. More...

class	GAParametersForm
	Form collecting input parameters for a genetic algorithm experiment. More...

class	GraphVertexMolViewerPanel
	A panel that collects three viewers: More...

class	GraphViewerPanel
	A Panel that holds the JUNG representation of a graph. More...

class	GUI
	Graphical User Interface of the DENOPTIM package. More...

class	GUIAPClassDefinitionDialog

class	GUICardPanel
	Class of GUI panels meant to occupy one card in the deck-of-cards layout of the main panel. More...

class	GUICompatibilityMatrixTab
	A panel for handling of compatibility matrix. More...

class	GUIEmptyVertexMaker

class	GUIFileOpener
	File opener for DENOPTIM GUI. More...

class	GUIFileSaver
	GUI component to provide pathname where to save stuff. More...

class	GUIGraphHandler
	A panel that understands DENOPTIM graphs and allows to create and edit them. More...

class	GUIInspectFSERun
	A panel that allows to inspect the output of an combinatorial experiment exploring a fragment space. More...

class	GUIInspectGARun
	A panel that allows to inspect the output of an artificial evolution experiment. More...

class	GUIMainPanel
	The main panel is a deck of cards that occupies all the GUI frame. More...

class	GUIModalDialog

class	GUIPreferences
	The collection of tunable preferences. More...

class	GUIPreferencesDialog

class	GUIPrepare
	Class representing the general structure of a form including a specific set of parameter collections. More...

class	GUIPrepareFitnessRunner
	Form that allows to test the configuration of a fitness provider. More...

class	GUIPrepareFSERun
	Master form containing all sub-forms that need to be filled to define the input parameters for FragSpaceExplorer. More...

class	GUIPrepareGARun
	Master form containing all sub-forms that need to be filled to define the input parameters for DenoptimGA. More...

class	GUITextReader
	A panel that allows to print the content of a text file into a GUI tab. More...

class	GUIVertexInspector
	A panel with a viewer capable of visualising DENOPTIM fragments and allows to create and edit fragments. More...

class	GUIVertexSelector
	A modal dialog with a viewer that understands the different types of DENOPTIM vertex and allows to select vertices and, if needed, attachment points. More...

class	HomePanel
	The home panel contains shortcuts buttons to perform the most common tasks. More...

interface	ILoadFragSpace
	Implemented by GUI components that want to allow user-driven loading of the fragment space. More...

interface	IParametersForm
	Interface for parameter forms. More...

interface	IVertexAPSelection
	Interface for all vertex viewers that intend to allow selection of attachment points. More...

class	JmolPanel

class	JUNGGraphSnapshot
	This class collects information on how a graph was displayed in a JUNG visialisation server (i.e., node positions and visible labels). More...

class	MainToolBar
	Main tool bar of the DENOPTIM graphical user interface. More...

class	MoleculeViewPanel
	A panel with a molecular viewer and data table. More...

class	MolToGraphParametersDialog

class	ParametersForm
	General structure of a form for collecting input parameters of various nature. More...

class	ScrollableJPupupMenu
	A popup menu' that has a fixed size and can be scrolled to see menu items that do not fit into the fixed-size panel. More...

class	Utils

class	VertexAsGraphViewPanel
	A panel to visualize a vertex as a graph component with attachment point table. More...

class	VertexAsTwoDimStructureViewPanel
	A panel to visualize a vertex as two-dimensional chemical structure with attachment point table. More...

class	VertexViewPanel
	A panel for visualizing vertices. More...

Classes