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DENOPTIM
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Form collecting input parameters for a combinatorial/virtual screening experiment performed by FragSpaceExplorer. More...
Public Member Functions | |
FSEParametersForm (Dimension d) | |
void | importParametersFromDenoptimParamsFile (String fileName) throws Exception |
Imports parameters from a properly formatted parameters file. More... | |
void | importSingleParameter (String key, String value) throws Exception |
void | putParametersToString (StringBuilder sb) throws Exception |
Public Member Functions inherited from denoptim.gui.ParametersForm | |
ParametersForm () | |
Empty constructor. More... | |
void | importParametersFromDenoptimParamsFile (String fileName) throws Exception |
void | importSingleParameter (String key, String value) throws Exception |
void | putParametersToString (StringBuilder sb) throws Exception |
boolean | hasUnsavedChanges () |
Returns the flag signaling unsaved changes. More... | |
void | setUnsavedChanges (boolean val) |
Set the status of the flag signaling unsaved changes. More... | |
void | showUnknownKeyWarning (Component parent, String paramType) |
Shown a warning dialog that informs the user about having found text that is not present in the ParametersForm implementation and is treated as free text. More... | |
void | importParametersFromDenoptimParamsFile (String fileName) throws Exception |
void | importSingleParameter (String key, String value) throws Exception |
void | putParametersToString (StringBuilder sb) throws Exception |
boolean | hasUnsavedChanges () |
void | setUnsavedChanges (boolean val) |
Package Attributes | |
JPanel | block |
JPanel | localBlock1 |
JPanel | localBlock2 |
JPanel | advOptsBlock |
JPanel | lineSrcOrNew |
JRadioButton | rdbSrcOrNew |
JPanel | lineFSESource |
JLabel | lblFSESource |
JTextField | txtFSESource |
JButton | btnFSESource |
JButton | btnLoadFSESource |
String | keyPar2 = "FSE-MaxLevel" |
JPanel | linePar2 |
JLabel | lblPar2 |
JTextField | txtPar2 |
String | keyPar7 = "FSE-NumOfProcessors" |
JPanel | linePar7 |
JLabel | lblPar7 |
JTextField | txtPar7 |
String | keyPar3 = "FSE-UIDFile" |
JPanel | linePar3 |
JLabel | lblPar3 |
JTextField | txtPar3 |
JButton | btnPar3 |
String | keyPar9 = "FSE-RootGraphs" |
JPanel | linePar9 |
JLabel | lblPar9 |
JTextField | txtPar9 |
JButton | btnPar9 |
String | keyPar8 = "FSE-Verbosity" |
JPanel | linePar8 |
JLabel | lblPar8 |
JTextField | txtPar8 |
String | keyPar1 = "FSE-WorkDir" |
JPanel | linePar1 |
JLabel | lblPar1 |
JTextField | txtPar1 |
JButton | btnPar1 |
String | keyPar4 = "FSE-DBRootFolder" |
JPanel | linePar4 |
JLabel | lblPar4 |
JTextField | txtPar4 |
JButton | btnPar4 |
String | keyPar5 = "FSE-MaxWait" |
JPanel | linePar5 |
JLabel | lblPar5 |
JTextField | txtPar5 |
String | keyPar6 = "FSE-WaitStep" |
JPanel | linePar6 |
JLabel | lblPar6 |
JTextField | txtPar6 |
String | keyPar11 = "FSE-CheckPointStepLength" |
JPanel | linePar11 |
JLabel | lblPar11 |
JTextField | txtPar11 |
String | keyPar12 = "FSE-RestartFromCheckpoint" |
JPanel | linePar12 |
JLabel | lblPar12 |
JTextField | txtPar12 |
JButton | btnPar12 |
String | NL = System.getProperty("line.separator") |
Package Attributes inherited from denoptim.gui.ParametersForm | |
final Dimension | fileLabelSize = new Dimension(250,28) |
Default sizes for file pathname labels. More... | |
final int | preferredHeight |
Default text field height. More... | |
final Dimension | fileFieldSize = new Dimension(350,preferredHeight) |
Default sizes for file pathname fields. More... | |
final Dimension | strFieldSize = new Dimension(75,preferredHeight) |
Default sizes for short pathname fields (i.e., string or number) More... | |
Private Attributes | |
Map< String, Object > | mapKeyFieldToValueField |
Map connecting the parameter keyword and the field containing the parameter value. More... | |
Static Private Attributes | |
static final long | serialVersionUID = 1L |
Version. More... | |
Additional Inherited Members | |
Protected Member Functions inherited from denoptim.gui.ParametersForm | |
String | getStringIfNotEmpty (String key, JTextField field, String prefix, String suffix) |
Produced the KEY:VALUE string for a general text field. More... | |
String | getStringIfNotEmpty (String key, JEditorPane field, boolean multipleLines) |
Produced the KEY:VALUE string for a general text editor pane The text can include numbers, characters, or both. More... | |
String | getStringIfNotEmpty (String key, JTextField field) |
Produced the KEY:VALUE string for a general text field. More... | |
String | getStringForKVLine (String key, JSpinner spinner) |
Produced the KEY:VALUE string for a general spinner. More... | |
String | getStringIfSelected (String key, JRadioButton btn) |
Produced the KEY:VALUE string for a on/off button. More... | |
String | getStringFromTable (String key, JTable tab) |
Produced an overall string including one or more KEY:VALUE strings taken from a table. More... | |
String | getStringFromTable (String key, JTable tab, boolean skipHeader) |
Produced an overall string including one or more KEY:VALUE strings taken from a table. More... | |
String | getStringFromTable (String key, JTable tab, int[] fields, boolean skipHeader) |
Produced an overall string including one or more KEY:VALUE strings taken from a table. More... | |
String | getStringFromTable (String key, JTable tab, int[] fields, String sep, boolean skipHeader) |
Produced an overall string including one or more KEY:VALUE strings taken from a table. More... | |
void | importParametersFromDenoptimParamsFile (String fileName, String keyRoot) throws Exception |
Reads in the parameters from a text file collecting DENOPTIM parameters in the form of KEY=VALUE lines. More... | |
void | preliminatyTasksUponImportingParams () |
Overwritten by subclasses. More... | |
void | adaptVisibility () |
Overwritten by subclasses. More... | |
void | importParameterFromLine (String line) throws Exception |
void | addToUnformattedTxt (String key, String value) |
JPanel | getPanelForUnformattedInput () |
String | getTextForUnformattedSettings () |
void | clearUnformattedTxtArea () |
Protected Attributes inherited from denoptim.gui.ParametersForm | |
boolean | unsavedChanges = false |
Flag notifying that some data was not saved. More... | |
FieldListener | fieldListener |
Listener for changes in parameters of this form. More... | |
RdbFieldChange | rdbFieldChange |
Listener for changes in radio button-bound parameters. More... | |
TabFieldChange | tabFieldChange |
Listener for changes in table-bound parameters. More... | |
CmbFieldChange | cmbFieldChange |
Listener for changes in combo box-bound parameters. More... | |
Map< String, Boolean > | checkedFlags = new HashMap<String,Boolean>() |
Map of keyword to search for when reading a parameters file. More... | |
JTextArea | txtUnformattedInput = new JTextArea(5,20) |
Storage of unformatted text for input files. More... | |
boolean | foundCLIOnlyContent = false |
Flag recording we have imported text containing a line that is not interpreted as a GUI-controllable parameter. More... | |
Form collecting input parameters for a combinatorial/virtual screening experiment performed by FragSpaceExplorer.
Definition at line 48 of file FSEParametersForm.java.
denoptim.gui.FSEParametersForm.FSEParametersForm | ( | Dimension | d | ) |
Definition at line 141 of file FSEParametersForm.java.
References denoptim.gui.FSEParametersForm.advOptsBlock, denoptim.gui.FSEParametersForm.block, denoptim.gui.FSEParametersForm.btnFSESource, denoptim.gui.FSEParametersForm.btnLoadFSESource, denoptim.gui.FSEParametersForm.btnPar1, denoptim.gui.FSEParametersForm.btnPar12, denoptim.gui.FSEParametersForm.btnPar3, denoptim.gui.FSEParametersForm.btnPar4, denoptim.gui.FSEParametersForm.btnPar9, denoptim.gui.ParametersForm.fieldListener, denoptim.gui.ParametersForm.fileFieldSize, denoptim.gui.ParametersForm.fileLabelSize, denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.FSEParametersForm.keyPar1, denoptim.gui.FSEParametersForm.keyPar11, denoptim.gui.FSEParametersForm.keyPar12, denoptim.gui.FSEParametersForm.keyPar2, denoptim.gui.FSEParametersForm.keyPar3, denoptim.gui.FSEParametersForm.keyPar4, denoptim.gui.FSEParametersForm.keyPar5, denoptim.gui.FSEParametersForm.keyPar6, denoptim.gui.FSEParametersForm.keyPar7, denoptim.gui.FSEParametersForm.keyPar8, denoptim.gui.FSEParametersForm.keyPar9, denoptim.gui.FSEParametersForm.lblFSESource, denoptim.gui.FSEParametersForm.lblPar1, denoptim.gui.FSEParametersForm.lblPar11, denoptim.gui.FSEParametersForm.lblPar12, denoptim.gui.FSEParametersForm.lblPar2, denoptim.gui.FSEParametersForm.lblPar3, denoptim.gui.FSEParametersForm.lblPar4, denoptim.gui.FSEParametersForm.lblPar5, denoptim.gui.FSEParametersForm.lblPar6, denoptim.gui.FSEParametersForm.lblPar7, denoptim.gui.FSEParametersForm.lblPar8, denoptim.gui.FSEParametersForm.lblPar9, denoptim.gui.FSEParametersForm.lineFSESource, denoptim.gui.FSEParametersForm.linePar1, denoptim.gui.FSEParametersForm.linePar11, denoptim.gui.FSEParametersForm.linePar12, denoptim.gui.FSEParametersForm.linePar2, denoptim.gui.FSEParametersForm.linePar3, denoptim.gui.FSEParametersForm.linePar4, denoptim.gui.FSEParametersForm.linePar5, denoptim.gui.FSEParametersForm.linePar6, denoptim.gui.FSEParametersForm.linePar7, denoptim.gui.FSEParametersForm.linePar8, denoptim.gui.FSEParametersForm.linePar9, denoptim.gui.FSEParametersForm.lineSrcOrNew, denoptim.gui.FSEParametersForm.localBlock1, denoptim.gui.FSEParametersForm.localBlock2, denoptim.gui.FSEParametersForm.mapKeyFieldToValueField, denoptim.gui.GUIFileOpener.pickFileForTxtField(), denoptim.gui.GUIFileOpener.pickFolderForTxtField(), denoptim.gui.ParametersForm.preferredHeight, denoptim.gui.FSEParametersForm.rdbSrcOrNew, denoptim.gui.ParametersForm.strFieldSize, denoptim.gui.FSEParametersForm.txtFSESource, denoptim.gui.FSEParametersForm.txtPar1, denoptim.gui.FSEParametersForm.txtPar11, denoptim.gui.FSEParametersForm.txtPar12, denoptim.gui.FSEParametersForm.txtPar2, denoptim.gui.FSEParametersForm.txtPar3, denoptim.gui.FSEParametersForm.txtPar4, denoptim.gui.FSEParametersForm.txtPar5, denoptim.gui.FSEParametersForm.txtPar6, denoptim.gui.FSEParametersForm.txtPar7, denoptim.gui.FSEParametersForm.txtPar8, and denoptim.gui.FSEParametersForm.txtPar9.
void denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile | ( | String | fileName | ) | throws Exception |
Imports parameters from a properly formatted parameters file.
The file is a text file with lines containing KEY=VALUE pairs. The visibility of the blocks of content is set accordingly to the parameters.
fileName | the pathname of the file to read |
Exception |
Reimplemented from denoptim.gui.ParametersForm.
Definition at line 479 of file FSEParametersForm.java.
References denoptim.gui.FSEParametersForm.advOptsBlock, denoptim.gui.ParametersForm.clearUnformattedTxtArea(), denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.FSEParametersForm.localBlock1, denoptim.gui.FSEParametersForm.localBlock2, denoptim.gui.FSEParametersForm.rdbSrcOrNew, and denoptim.gui.ParametersForm.showUnknownKeyWarning().
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.FSEParametersForm.putParametersToString().
void denoptim.gui.FSEParametersForm.importSingleParameter | ( | String | key, |
String | value | ||
) | throws Exception |
Reimplemented from denoptim.gui.ParametersForm.
Definition at line 496 of file FSEParametersForm.java.
References denoptim.gui.ParametersForm.addToUnformattedTxt(), and denoptim.gui.FSEParametersForm.mapKeyFieldToValueField.
void denoptim.gui.FSEParametersForm.putParametersToString | ( | StringBuilder | sb | ) | throws Exception |
Reimplemented from denoptim.gui.ParametersForm.
Definition at line 544 of file FSEParametersForm.java.
References denoptim.gui.ParametersForm.getStringIfNotEmpty(), denoptim.gui.ParametersForm.getTextForUnformattedSettings(), denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.FSEParametersForm.keyPar1, denoptim.gui.FSEParametersForm.keyPar11, denoptim.gui.FSEParametersForm.keyPar12, denoptim.gui.FSEParametersForm.keyPar2, denoptim.gui.FSEParametersForm.keyPar3, denoptim.gui.FSEParametersForm.keyPar4, denoptim.gui.FSEParametersForm.keyPar5, denoptim.gui.FSEParametersForm.keyPar6, denoptim.gui.FSEParametersForm.keyPar7, denoptim.gui.FSEParametersForm.keyPar8, denoptim.gui.FSEParametersForm.keyPar9, denoptim.gui.FSEParametersForm.NL, denoptim.gui.FSEParametersForm.rdbSrcOrNew, denoptim.gui.FSEParametersForm.txtFSESource, denoptim.gui.FSEParametersForm.txtPar1, denoptim.gui.FSEParametersForm.txtPar11, denoptim.gui.FSEParametersForm.txtPar12, denoptim.gui.FSEParametersForm.txtPar2, denoptim.gui.FSEParametersForm.txtPar3, denoptim.gui.FSEParametersForm.txtPar4, denoptim.gui.FSEParametersForm.txtPar5, denoptim.gui.FSEParametersForm.txtPar6, denoptim.gui.FSEParametersForm.txtPar7, denoptim.gui.FSEParametersForm.txtPar8, and denoptim.gui.FSEParametersForm.txtPar9.
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Definition at line 65 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile().
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Definition at line 62 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm().
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Definition at line 73 of file FSEParametersForm.java.
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Definition at line 74 of file FSEParametersForm.java.
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Definition at line 107 of file FSEParametersForm.java.
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Definition at line 134 of file FSEParametersForm.java.
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Definition at line 90 of file FSEParametersForm.java.
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Definition at line 113 of file FSEParametersForm.java.
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Definition at line 96 of file FSEParametersForm.java.
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Definition at line 103 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 125 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 130 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 76 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 86 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 109 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 115 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 120 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 81 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 98 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 92 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 71 of file FSEParametersForm.java.
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Definition at line 105 of file FSEParametersForm.java.
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Definition at line 127 of file FSEParametersForm.java.
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Definition at line 132 of file FSEParametersForm.java.
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Definition at line 78 of file FSEParametersForm.java.
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Definition at line 88 of file FSEParametersForm.java.
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Definition at line 111 of file FSEParametersForm.java.
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Definition at line 117 of file FSEParametersForm.java.
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Definition at line 122 of file FSEParametersForm.java.
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Definition at line 83 of file FSEParametersForm.java.
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Definition at line 100 of file FSEParametersForm.java.
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Definition at line 94 of file FSEParametersForm.java.
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Definition at line 70 of file FSEParametersForm.java.
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Definition at line 104 of file FSEParametersForm.java.
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Definition at line 126 of file FSEParametersForm.java.
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Definition at line 131 of file FSEParametersForm.java.
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Definition at line 77 of file FSEParametersForm.java.
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Definition at line 87 of file FSEParametersForm.java.
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Definition at line 110 of file FSEParametersForm.java.
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Definition at line 116 of file FSEParametersForm.java.
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Definition at line 121 of file FSEParametersForm.java.
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Definition at line 82 of file FSEParametersForm.java.
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Definition at line 99 of file FSEParametersForm.java.
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Definition at line 93 of file FSEParametersForm.java.
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Definition at line 67 of file FSEParametersForm.java.
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Definition at line 63 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile().
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Definition at line 64 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile().
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Map connecting the parameter keyword and the field containing the parameter value.
Definition at line 60 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.importSingleParameter().
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Definition at line 139 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 68 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), denoptim.gui.FSEParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Version.
Definition at line 54 of file FSEParametersForm.java.
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Definition at line 72 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 106 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 128 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 133 of file FSEParametersForm.java.
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Definition at line 79 of file FSEParametersForm.java.
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Definition at line 89 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 112 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 118 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 123 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 84 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 101 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().
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Definition at line 95 of file FSEParametersForm.java.
Referenced by denoptim.gui.FSEParametersForm.FSEParametersForm(), and denoptim.gui.FSEParametersForm.putParametersToString().