A panel for visualizing vertices. More...

Inheritance diagram for denoptim.gui.VertexViewPanel:

Collaboration diagram for denoptim.gui.VertexViewPanel:

Public Member Functions
	VertexViewPanel (boolean editableTable)
	Constructor that allows to specify whether the AP table is editable or not. More...

boolean	hasUnsavedAPEdits ()
	Check for unsaved edits to the AP data. More...

void	deprotectEdits ()
	Overrides the flag signaling unsaved edits to saying that there are no altered data. More...

void	setSwitchable (boolean switchable)
	Enable/disable switch-able view. More...

boolean	loadSMILES (String smiles)
	Loads a molecule build from a smiles string. More...

Vertex	getLoadedStructure ()
	Returns the currently loaded vertex. More...

void	loadPlainStructure (IAtomContainer mol)
	Loads a structure in the Jmol viewer. More...

void	loadVertexToViewer (Vertex v)
	Loads the given vertex to this viewer. More...

void	highlightAtoms (List< IAtom > atoms)
	Highlights the given atoms in the Jmol viewer. More...

void	clearCurrentSystem ()
	Removes the currently visualized molecule and AP table. More...

void	clearMolecularViewer (boolean dataIsComing)
	Clears the molecular viewer. More...

Map< Integer, AttachmentPoint >	getActiveMapAPs ()
	Returns the map of attachment points in the currently active viewer. More...

DefaultTableModel	getAPTableModel ()

ArrayList< Integer >	getSelectedAPIDs ()
	Identifies which attachment points are selected in the currently active viewer. More...

Public Attributes
boolean	alteredAPData = false
	Flag signalling that data about APs has been changed in the GUI. More...

Protected Member Functions
ArrayList< IAtom >	getAtomsSelectedFromJMol ()
	Identifies the atoms that are selected in the Jmol viewer. More...

void	activateTabEditsListener (boolean var)
	Allows to activate and deactivate the listener. More...

void	dispose ()

Protected Attributes
final String	EMPTYCARDNAME = "emptyCard"

final String	GRAPHVIEWERCARDNAME = "emptyVertesCard"

final String	MOLVIEWERCARDNAME = "fragViewerCard"

final String	TWODVIEWERCARDNAME = "twoDimViewerCard"

Private Member Functions
void	initialize ()

void	switchToEmptyCard ()

void	switchToGraphNodeViewer ()

void	switchToMolecularViewer ()

void	switchTo2DViewer ()

void	loadEmptyVertexToViewer (EmptyVertex ev)
	Loads the given empty vertex to this viewer. More...

void	loadFragmentToViewer (Fragment frag)
	Loads the given fragments to this viewer. More...

void	loadTemplateToViewer (Template tmpl)
	Loads the given template to this viewer. More...

Private Attributes
Vertex	vertex
	The currently loaded vertex. More...

JPanel	titlePanel

JLabel	labTitle

JButton	btnSwitchToNodeViewer

JButton	btnSwitchToMolViewer

JButton	btnSwitchTo2DViewer

JPanel	centralPanel

JPanel	emptyViewerCard

FragmentViewPanel	fragViewer

VertexAsGraphViewPanel	graphNodeViewer

VertexAsTwoDimStructureViewPanel	twoDimViewer

IVertexAPSelection	activeViewer

boolean	editableAPTable = false

boolean	switchbleByVertexType = true
	Flag enabling/disabling the capability to switch between mol- and graph-based viewer. More...

Static Private Attributes
static final long	serialVersionUID = 1L
	Version UID. More...

Detailed Description

A panel for visualizing vertices.

This is a deck of cards that brings up a specific card depending on the type of vertex to visualize.

Author: Marco Foscato

Definition at line 55 of file VertexViewPanel.java.

Constructor & Destructor Documentation

◆ VertexViewPanel()

denoptim.gui.VertexViewPanel.VertexViewPanel ( boolean editableTable )

Constructor that allows to specify whether the AP table is editable or not.

Parameters

editableTable use true to make the AP table editable

Definition at line 106 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.initialize().

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Member Function Documentation

◆ activateTabEditsListener()

void denoptim.gui.VertexViewPanel.activateTabEditsListener ( boolean var )

protected

Allows to activate and deactivate the listener.

Parameters

var	use `true` to activate the listener

Definition at line 558 of file VertexViewPanel.java.

References denoptim.gui.FragmentViewPanel.activateTabEditsListener(), and denoptim.gui.VertexViewPanel.fragViewer.

Referenced by denoptim.gui.GUIVertexInspector.activateTabEditsListener(), and denoptim.gui.GUIVertexSelector.activateTabEditsListener().

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◆ clearCurrentSystem()

void denoptim.gui.VertexViewPanel.clearCurrentSystem ( )

Removes the currently visualized molecule and AP table.

Definition at line 481 of file VertexViewPanel.java.

References denoptim.gui.FragmentViewPanel.clearAPTable(), denoptim.gui.VertexAsGraphViewPanel.clearAPTable(), denoptim.gui.VertexViewPanel.fragViewer, denoptim.gui.VertexViewPanel.graphNodeViewer, denoptim.gui.VertexViewPanel.switchToEmptyCard(), and denoptim.gui.VertexViewPanel.vertex.

Referenced by denoptim.gui.GUIVertexInspector.clearCurrentSystem(), and denoptim.gui.GUIVertexSelector.clearCurrentSystem().

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◆ clearMolecularViewer()

void denoptim.gui.VertexViewPanel.clearMolecularViewer ( boolean dataIsComing )

Clears the molecular viewer.

WARNING: this is VERY SLOW: do not do it unless you are sure you really need to clear the data. Typically, if there is incoming data, you do not need to run this, as the old data will be overwritten anyway.

Parameters

dataIsComing set true when there is incoming molecular data to visualize.

Definition at line 503 of file VertexViewPanel.java.

References denoptim.gui.FragmentViewPanel.clearMolecularViewer(), and denoptim.gui.VertexViewPanel.fragViewer.

Referenced by denoptim.gui.GUIVertexInspector.removeCurrentVrtx().

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◆ deprotectEdits()

void denoptim.gui.VertexViewPanel.deprotectEdits ( )

Overrides the flag signaling unsaved edits to saying that there are no altered data.

Definition at line 224 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.alteredAPData, denoptim.gui.FragmentViewPanel.deprotectEdits(), denoptim.gui.VertexAsGraphViewPanel.deprotectEdits(), denoptim.gui.VertexViewPanel.fragViewer, and denoptim.gui.VertexViewPanel.graphNodeViewer.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem().

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◆ dispose()

void denoptim.gui.VertexViewPanel.dispose ( )

protected

Definition at line 568 of file VertexViewPanel.java.

References denoptim.gui.FragmentViewPanel.dispose(), and denoptim.gui.VertexViewPanel.fragViewer.

Referenced by denoptim.gui.GUIAtomSelectionDialog.dispose(), denoptim.gui.GUIVertexInspector.dispose(), and denoptim.gui.GUIVertexSelector.GUIVertexSelector().

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◆ getActiveMapAPs()

Map< Integer, AttachmentPoint > denoptim.gui.VertexViewPanel.getActiveMapAPs ( )

Returns the map of attachment points in the currently active viewer.

Returns: the map of attachment points in the currently active viewer.

Definition at line 514 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, and denoptim.gui.IVertexAPSelection.getMapOfAPsInTable().

Referenced by denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

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◆ getAPTableModel()

DefaultTableModel denoptim.gui.VertexViewPanel.getAPTableModel ( )

Returns: the table model of the currently active viewer

Definition at line 524 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, and denoptim.gui.IVertexAPSelection.getAPTableModel().

Referenced by denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

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◆ getAtomsSelectedFromJMol()

ArrayList< IAtom > denoptim.gui.VertexViewPanel.getAtomsSelectedFromJMol ( )

protected

Identifies the atoms that are selected in the Jmol viewer.

Returns: the list of selected atoms

Definition at line 547 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.fragViewer, and denoptim.gui.FragmentViewPanel.getAtomsSelectedFromJMol().

Referenced by denoptim.gui.GUIAtomSelectionDialog.GUIAtomSelectionDialog(), and denoptim.gui.GUIVertexInspector.initialize().

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◆ getLoadedStructure()

Vertex denoptim.gui.VertexViewPanel.getLoadedStructure ( )

Returns the currently loaded vertex.

In case of mismatch between the system loaded into the Jmol viewer and the one in the local memory, we take that from Jmol and made it be The 'current fragment'. Previously set references to the previous 'current fragment' will make no sense anymore.

Returns: the chemical representation of what is currently visualised. Can be empty and null.

Definition at line 323 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.fragViewer, denoptim.gui.FragmentViewPanel.getLoadedStructure(), denoptim.gui.VertexViewPanel.switchToMolecularViewer(), and denoptim.gui.VertexViewPanel.vertex.

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

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◆ getSelectedAPIDs()

ArrayList< Integer > denoptim.gui.VertexViewPanel.getSelectedAPIDs ( )

Identifies which attachment points are selected in the currently active viewer.

Returns: the list of attachment points indexes

Definition at line 536 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, and denoptim.gui.IVertexAPSelection.getSelectedAPIDs().

Referenced by denoptim.gui.GUIVertexSelector.GUIVertexSelector().

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◆ hasUnsavedAPEdits()

boolean denoptim.gui.VertexViewPanel.hasUnsavedAPEdits ( )

Check for unsaved edits to the AP data.

Returns: true if there are unsaved edits

Definition at line 213 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.alteredAPData.

Referenced by denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), and denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

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◆ highlightAtoms()

void denoptim.gui.VertexViewPanel.highlightAtoms ( List< IAtom > atoms )

Highlights the given atoms in the Jmol viewer.

Parameters

atoms the atoms to highlight

Definition at line 471 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.fragViewer, and denoptim.gui.FragmentViewPanel.setColorOfAtoms().

Referenced by denoptim.gui.GUIAtomSelectionDialog.GUIAtomSelectionDialog().

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◆ initialize()

void denoptim.gui.VertexViewPanel.initialize ( )

private

Definition at line 115 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.VertexViewPanel().

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◆ loadEmptyVertexToViewer()

void denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer ( EmptyVertex ev )

private

Loads the given empty vertex to this viewer.

This type of vertex does not have any associated molecular data, but does have attachment points (APs) that are listed in table of APs.

Parameters

ev	the vertex to visualize

Definition at line 388 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.btnSwitchTo2DViewer, denoptim.gui.VertexViewPanel.btnSwitchToMolViewer, denoptim.gui.VertexViewPanel.btnSwitchToNodeViewer, denoptim.gui.VertexViewPanel.graphNodeViewer, denoptim.gui.VertexAsGraphViewPanel.loadVertexToViewer(), denoptim.gui.VertexViewPanel.switchbleByVertexType, and denoptim.gui.VertexViewPanel.switchToGraphNodeViewer().

Referenced by denoptim.gui.VertexViewPanel.loadVertexToViewer().

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◆ loadFragmentToViewer()

void denoptim.gui.VertexViewPanel.loadFragmentToViewer ( Fragment frag )

private

Loads the given fragments to this viewer.

The molecular data is loaded in the Jmol viewer, and the attachment point (AP) information in the the list of APs. Jmol is not aware of AP-related information, so this also launches the generation of the graphical objects representing the APs.

Parameters

frag	the fragment to visualize

Definition at line 408 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.loadTemplateToViewer(), and denoptim.gui.VertexViewPanel.loadVertexToViewer().

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◆ loadPlainStructure()

void denoptim.gui.VertexViewPanel.loadPlainStructure ( IAtomContainer mol )

Loads a structure in the Jmol viewer.

Parameters

mol	the structure to load

Definition at line 342 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.fragViewer, denoptim.gui.FragmentViewPanel.loadPlainStructure(), and denoptim.gui.VertexViewPanel.switchToMolecularViewer().

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromFile().

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◆ loadSMILES()

boolean denoptim.gui.VertexViewPanel.loadSMILES ( String smiles )

Loads a molecule build from a smiles string.

The 3D geometry is either taken from remote CACTUS service (requires connection to the Internet) or built with CDK tools, as a fall-back. The CDK builder, however will produce a somewhat lower quality conformation than that obtained from on online generator.

Parameters

smiles the SMILES of the molecule to load

Returns: true if the SMILES could be converted into a 3D structure

Exceptions

DENOPTIMException

Definition at line 306 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.fragViewer, denoptim.gui.FragmentViewPanel.loadSMILES(), and denoptim.gui.VertexViewPanel.switchToMolecularViewer().

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromSMILES().

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◆ loadTemplateToViewer()

void denoptim.gui.VertexViewPanel.loadTemplateToViewer ( Template tmpl )

private

Loads the given template to this viewer.

Parameters

tmpl	the template to visualize

Definition at line 431 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.loadVertexToViewer().

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◆ loadVertexToViewer()

void denoptim.gui.VertexViewPanel.loadVertexToViewer ( Vertex v )

Loads the given vertex to this viewer.

The molecular data is loaded in the Jmol viewer, and the attachment point (AP) information in the the list of APs. Jmol is not aware of AP-related information, so this also launches the generation of the graphical objects representing the APs.

Parameters

frag	the fragment to visualize

Definition at line 358 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.labTitle, denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), denoptim.gui.VertexViewPanel.switchToEmptyCard(), and denoptim.gui.VertexViewPanel.vertex.

Referenced by denoptim.gui.GUIAtomSelectionDialog.GUIAtomSelectionDialog(), denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer(), and denoptim.gui.GUIVertexSelector.loadCurrentVrtxIdxToViewer().

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◆ setSwitchable()

void denoptim.gui.VertexViewPanel.setSwitchable ( boolean switchable )

Enable/disable switch-able view.

Does not overwrite the control set upon loading a vertex

Definition at line 237 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.btnSwitchTo2DViewer, denoptim.gui.VertexViewPanel.btnSwitchToMolViewer, denoptim.gui.VertexViewPanel.btnSwitchToNodeViewer, and denoptim.gui.VertexViewPanel.switchbleByVertexType.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

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◆ switchTo2DViewer()

void denoptim.gui.VertexViewPanel.switchTo2DViewer ( )

private

Definition at line 286 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, denoptim.gui.VertexViewPanel.centralPanel, denoptim.gui.VertexViewPanel.twoDimViewer, and denoptim.gui.VertexViewPanel.TWODVIEWERCARDNAME.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.loadFragmentToViewer().

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◆ switchToEmptyCard()

void denoptim.gui.VertexViewPanel.switchToEmptyCard ( )

private

Definition at line 256 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, denoptim.gui.VertexViewPanel.btnSwitchTo2DViewer, denoptim.gui.VertexViewPanel.btnSwitchToMolViewer, denoptim.gui.VertexViewPanel.btnSwitchToNodeViewer, denoptim.gui.VertexViewPanel.centralPanel, and denoptim.gui.VertexViewPanel.EMPTYCARDNAME.

Referenced by denoptim.gui.VertexViewPanel.clearCurrentSystem(), denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.loadVertexToViewer().

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◆ switchToGraphNodeViewer()

void denoptim.gui.VertexViewPanel.switchToGraphNodeViewer ( )

private

Definition at line 268 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, denoptim.gui.VertexViewPanel.centralPanel, denoptim.gui.VertexViewPanel.graphNodeViewer, and denoptim.gui.VertexViewPanel.GRAPHVIEWERCARDNAME.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), and denoptim.gui.VertexViewPanel.loadTemplateToViewer().

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◆ switchToMolecularViewer()

void denoptim.gui.VertexViewPanel.switchToMolecularViewer ( )

private

Definition at line 277 of file VertexViewPanel.java.

References denoptim.gui.VertexViewPanel.activeViewer, denoptim.gui.VertexViewPanel.centralPanel, denoptim.gui.VertexViewPanel.fragViewer, and denoptim.gui.VertexViewPanel.MOLVIEWERCARDNAME.

Referenced by denoptim.gui.VertexViewPanel.getLoadedStructure(), denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadPlainStructure(), and denoptim.gui.VertexViewPanel.loadSMILES().

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Member Data Documentation

◆ activeViewer

IVertexAPSelection denoptim.gui.VertexViewPanel.activeViewer

private

Definition at line 85 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.getActiveMapAPs(), denoptim.gui.VertexViewPanel.getAPTableModel(), denoptim.gui.VertexViewPanel.getSelectedAPIDs(), denoptim.gui.VertexViewPanel.switchTo2DViewer(), denoptim.gui.VertexViewPanel.switchToEmptyCard(), denoptim.gui.VertexViewPanel.switchToGraphNodeViewer(), and denoptim.gui.VertexViewPanel.switchToMolecularViewer().

◆ alteredAPData

boolean denoptim.gui.VertexViewPanel.alteredAPData = false

Flag signalling that data about APs has been changed in the GUI.

Definition at line 70 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.deprotectEdits(), denoptim.gui.VertexViewPanel.hasUnsavedAPEdits(), and denoptim.gui.VertexViewPanel.initialize().

◆ btnSwitchTo2DViewer

JButton denoptim.gui.VertexViewPanel.btnSwitchTo2DViewer

private

Definition at line 77 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), denoptim.gui.VertexViewPanel.setSwitchable(), and denoptim.gui.VertexViewPanel.switchToEmptyCard().

◆ btnSwitchToMolViewer

JButton denoptim.gui.VertexViewPanel.btnSwitchToMolViewer

private

Definition at line 76 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), denoptim.gui.VertexViewPanel.setSwitchable(), and denoptim.gui.VertexViewPanel.switchToEmptyCard().

◆ btnSwitchToNodeViewer

JButton denoptim.gui.VertexViewPanel.btnSwitchToNodeViewer

private

Definition at line 75 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), denoptim.gui.VertexViewPanel.setSwitchable(), and denoptim.gui.VertexViewPanel.switchToEmptyCard().

◆ centralPanel

JPanel denoptim.gui.VertexViewPanel.centralPanel

private

Definition at line 79 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.switchTo2DViewer(), denoptim.gui.VertexViewPanel.switchToEmptyCard(), denoptim.gui.VertexViewPanel.switchToGraphNodeViewer(), and denoptim.gui.VertexViewPanel.switchToMolecularViewer().

◆ editableAPTable

boolean denoptim.gui.VertexViewPanel.editableAPTable = false

private

Definition at line 91 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize().

◆ EMPTYCARDNAME

final String denoptim.gui.VertexViewPanel.EMPTYCARDNAME = "emptyCard"

protected

Definition at line 86 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.switchToEmptyCard().

◆ emptyViewerCard

JPanel denoptim.gui.VertexViewPanel.emptyViewerCard

private

Definition at line 81 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize().

◆ fragViewer

FragmentViewPanel denoptim.gui.VertexViewPanel.fragViewer

private

Definition at line 82 of file VertexViewPanel.java.

◆ graphNodeViewer

VertexAsGraphViewPanel denoptim.gui.VertexViewPanel.graphNodeViewer

private

Definition at line 83 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.clearCurrentSystem(), denoptim.gui.VertexViewPanel.deprotectEdits(), denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), and denoptim.gui.VertexViewPanel.switchToGraphNodeViewer().

◆ GRAPHVIEWERCARDNAME

final String denoptim.gui.VertexViewPanel.GRAPHVIEWERCARDNAME = "emptyVertesCard"

protected

Definition at line 87 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.switchToGraphNodeViewer().

◆ labTitle

JLabel denoptim.gui.VertexViewPanel.labTitle

private

Definition at line 74 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.loadVertexToViewer().

◆ MOLVIEWERCARDNAME

final String denoptim.gui.VertexViewPanel.MOLVIEWERCARDNAME = "fragViewerCard"

protected

Definition at line 88 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.switchToMolecularViewer().

◆ serialVersionUID

final long denoptim.gui.VertexViewPanel.serialVersionUID = 1L

staticprivate

Version UID.

Definition at line 60 of file VertexViewPanel.java.

◆ switchbleByVertexType

boolean denoptim.gui.VertexViewPanel.switchbleByVertexType = true

private

Flag enabling/disabling the capability to switch between mol- and graph-based viewer.

Definition at line 97 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.loadEmptyVertexToViewer(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), denoptim.gui.VertexViewPanel.loadTemplateToViewer(), and denoptim.gui.VertexViewPanel.setSwitchable().

◆ titlePanel

JPanel denoptim.gui.VertexViewPanel.titlePanel

private

Definition at line 72 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize().

◆ twoDimViewer

VertexAsTwoDimStructureViewPanel denoptim.gui.VertexViewPanel.twoDimViewer

private

Definition at line 84 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), denoptim.gui.VertexViewPanel.loadFragmentToViewer(), and denoptim.gui.VertexViewPanel.switchTo2DViewer().

◆ TWODVIEWERCARDNAME

final String denoptim.gui.VertexViewPanel.TWODVIEWERCARDNAME = "twoDimViewerCard"

protected

Definition at line 89 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.initialize(), and denoptim.gui.VertexViewPanel.switchTo2DViewer().

◆ vertex

Vertex denoptim.gui.VertexViewPanel.vertex

private

The currently loaded vertex.

Definition at line 65 of file VertexViewPanel.java.

Referenced by denoptim.gui.VertexViewPanel.clearCurrentSystem(), denoptim.gui.VertexViewPanel.getLoadedStructure(), and denoptim.gui.VertexViewPanel.loadVertexToViewer().

The documentation for this class was generated from the following file:

/github/workspace/src/main/java/denoptim/gui/VertexViewPanel.java

Public Member Functions

Public Attributes

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ VertexViewPanel()

Member Function Documentation

◆ activateTabEditsListener()

◆ clearCurrentSystem()

◆ clearMolecularViewer()

◆ deprotectEdits()

◆ dispose()

◆ getActiveMapAPs()

◆ getAPTableModel()

◆ getAtomsSelectedFromJMol()

◆ getLoadedStructure()

◆ getSelectedAPIDs()

◆ hasUnsavedAPEdits()

◆ highlightAtoms()

◆ initialize()

◆ loadEmptyVertexToViewer()

◆ loadFragmentToViewer()

◆ loadPlainStructure()

◆ loadSMILES()

◆ loadTemplateToViewer()

◆ loadVertexToViewer()

◆ setSwitchable()

◆ switchTo2DViewer()

◆ switchToEmptyCard()

◆ switchToGraphNodeViewer()

◆ switchToMolecularViewer()

Member Data Documentation

◆ activeViewer

◆ alteredAPData

◆ btnSwitchTo2DViewer

◆ btnSwitchToMolViewer

◆ btnSwitchToNodeViewer

◆ centralPanel

◆ editableAPTable

◆ EMPTYCARDNAME

◆ emptyViewerCard

◆ fragViewer

◆ graphNodeViewer

◆ GRAPHVIEWERCARDNAME

◆ labTitle

◆ MOLVIEWERCARDNAME

◆ serialVersionUID

◆ switchbleByVertexType

◆ titlePanel

◆ twoDimViewer

◆ TWODVIEWERCARDNAME

◆ vertex