A panel to visualize a vertex as two-dimensional chemical structure with attachment point table. More...

Inheritance diagram for denoptim.gui.VertexAsTwoDimStructureViewPanel:

Collaboration diagram for denoptim.gui.VertexAsTwoDimStructureViewPanel:

Classes
class	AtomOrAPGenerator

class	PausableTableModelListener

class	TwoDimStructurePanel
	Panel dealing with the painting of 2D chemical representation. More...

Public Member Functions
	VertexAsTwoDimStructureViewPanel (boolean editableTable)
	Constructor that allows to specify whether the AP table is editable or not. More...

	VertexAsTwoDimStructureViewPanel (boolean editableTable, int dividerPosition)
	Constructor that allows to specify whether the AP table is editable or not. More...

void	setVertexSpecificEditableAPTable (boolean editable)

void	loadVertexToViewer (Vertex v)

boolean	hasUnsavedAPEdits ()
	Check for unsaved edits to the AP data. More...

void	deprotectEdits ()
	Overrides the flag signaling unsaved edits to saying that there are no altered data. More...

void	clearAll ()
	Removes the currently visualized molecule and AP table. More...

void	clearAPTable ()
	Clears the table of attachment points. More...

ArrayList< AttachmentPoint >	getSelectedAPs ()
	Identifies which attachment points are selected in the visualized table. More...

ArrayList< Integer >	getSelectedAPIDs ()
	Identifies which attachment points are selected in the visualized table. More...

void	activateTabEditsListener (boolean var)
	Allows to activate and deactivate the listener. More...

Map< Integer, AttachmentPoint >	getMapOfAPsInTable ()

DefaultTableModel	getAPTableModel ()

ArrayList< Integer >	getSelectedAPIDs ()

Map< Integer, AttachmentPoint >	getMapOfAPsInTable ()

DefaultTableModel	getAPTableModel ()

Public Attributes
boolean	alteredAPData = false
	Flag signaling that data about APs has been changed in the GUI. More...

Public Attributes inherited from denoptim.gui.IVertexAPSelection
final String	APDATACHANGEEVENT = "APDATA"

Protected Attributes
Map< Integer, AttachmentPoint >	mapAPs = null
	Temporary list of attachment points of the current fragment. More...

DefaultTableModel	apTabModel

JTable	apTable

Private Member Functions
void	initialize (int dividerPosition)

void	loadVertexStructure ()

void	clearPanel ()
	trashed the current panel displaying any 2D structure and replaces it with a new empty panel. More...

void	updateAPsMapAndTable ()
	Uses the AP of the `Fragment` to create a new map and table of APs. More...

void	preSelectAPs ()

Private Attributes
Vertex	vertex
	The currently loaded fragment. More...

JScrollPane	viewPanel

JPanel	twoDimView

JScrollPane	tabPanel

boolean	editableAPTable = false

boolean	vertexSpecificAPTabEditable = true

Static Private Attributes
static final long	serialVersionUID = 1L
	Version UID. More...

Detailed Description

A panel to visualize a vertex as two-dimensional chemical structure with attachment point table.

Author: Marco Foscato

Definition at line 79 of file VertexAsTwoDimStructureViewPanel.java.

Constructor & Destructor Documentation

◆ VertexAsTwoDimStructureViewPanel() [1/2]

denoptim.gui.VertexAsTwoDimStructureViewPanel.VertexAsTwoDimStructureViewPanel ( boolean editableTable )

Constructor that allows to specify whether the AP table is editable or not.

Parameters

editableTable use true to make the AP table editable

Definition at line 328 of file VertexAsTwoDimStructureViewPanel.java.

◆ VertexAsTwoDimStructureViewPanel() [2/2]

denoptim.gui.VertexAsTwoDimStructureViewPanel.VertexAsTwoDimStructureViewPanel	(	boolean	editableTable,
		int	dividerPosition
	)

Constructor that allows to specify whether the AP table is editable or not.

Parameters

parent	the parent component.
editableTable	use `true` to make the AP table editable
dividerPosition	allows to set the initial position of the divide

Definition at line 342 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.editableAPTable, and denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize().

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Member Function Documentation

◆ activateTabEditsListener()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.activateTabEditsListener ( boolean var )

Allows to activate and deactivate the listener.

Parameters

var	use `true` to activate the listener

Definition at line 608 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel, and denoptim.gui.VertexAsTwoDimStructureViewPanel.PausableTableModelListener.setActive().

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable(), denoptim.gui.VertexAsTwoDimStructureViewPanel.preSelectAPs(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable().

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◆ clearAll()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAll ( )

Removes the currently visualized molecule and AP table.

Definition at line 519 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable().

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◆ clearAPTable()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable ( )

Clears the table of attachment points.

Definition at line 529 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.activateTabEditsListener(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAll(), denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable().

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◆ clearPanel()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.clearPanel ( )

private

trashed the current panel displaying any 2D structure and replaces it with a new empty panel.

Definition at line 432 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.twoDimView, and denoptim.gui.VertexAsTwoDimStructureViewPanel.viewPanel.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexStructure().

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◆ deprotectEdits()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.deprotectEdits ( )

Overrides the flag signaling unsaved edits to saying that there are no altered data.

Definition at line 457 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.alteredAPData.

◆ getAPTableModel()

DefaultTableModel denoptim.gui.VertexAsTwoDimStructureViewPanel.getAPTableModel ( )

Implements denoptim.gui.IVertexAPSelection.

Definition at line 633 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel.

◆ getMapOfAPsInTable()

Map< Integer, AttachmentPoint > denoptim.gui.VertexAsTwoDimStructureViewPanel.getMapOfAPsInTable ( )

Implements denoptim.gui.IVertexAPSelection.

Definition at line 625 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.mapAPs.

◆ getSelectedAPIDs()

ArrayList< Integer > denoptim.gui.VertexAsTwoDimStructureViewPanel.getSelectedAPIDs ( )

Identifies which attachment points are selected in the visualized table.

Returns: the list of attachment points indexes

Implements denoptim.gui.IVertexAPSelection.

Definition at line 565 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.apTable.

◆ getSelectedAPs()

ArrayList< AttachmentPoint > denoptim.gui.VertexAsTwoDimStructureViewPanel.getSelectedAPs ( )

Identifies which attachment points are selected in the visualized table.

Returns: the list of attachment points

Definition at line 547 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.apTable, and denoptim.gui.VertexAsTwoDimStructureViewPanel.mapAPs.

◆ hasUnsavedAPEdits()

boolean denoptim.gui.VertexAsTwoDimStructureViewPanel.hasUnsavedAPEdits ( )

Check for unsaved edits to the AP data.

Returns: true if there are unsaved edits

Definition at line 446 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.alteredAPData.

◆ initialize()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize ( int dividerPosition )

private

Definition at line 352 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.apTable, denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel, denoptim.gui.VertexAsTwoDimStructureViewPanel.clearPanel(), denoptim.gui.VertexAsTwoDimStructureViewPanel.editableAPTable, denoptim.gui.VertexAsTwoDimStructureViewPanel.tabPanel, and denoptim.gui.VertexAsTwoDimStructureViewPanel.vertexSpecificAPTabEditable.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.VertexAsTwoDimStructureViewPanel().

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◆ loadVertexStructure()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexStructure ( )

private

Definition at line 416 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.clearPanel(), denoptim.gui.VertexAsTwoDimStructureViewPanel.twoDimView, and denoptim.gui.VertexAsTwoDimStructureViewPanel.vertex.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer().

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◆ loadVertexToViewer()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer ( Vertex v )

Definition at line 401 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable(), denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexStructure(), denoptim.gui.VertexAsTwoDimStructureViewPanel.preSelectAPs(), denoptim.gui.VertexAsTwoDimStructureViewPanel.setVertexSpecificEditableAPTable(), denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.vertex.

Referenced by denoptim.gui.VertexViewPanel.loadFragmentToViewer().

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◆ preSelectAPs()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.preSelectAPs ( )

private

Definition at line 492 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.activateTabEditsListener(), denoptim.gui.VertexAsTwoDimStructureViewPanel.apTable, denoptim.graph.Vertex.getProperty(), denoptim.gui.GUIVertexSelector.PRESELECTEDAPSFIELD, denoptim.gui.GUIVertexSelector.PRESELECTEDAPSFIELDSEP, and denoptim.gui.VertexAsTwoDimStructureViewPanel.vertex.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer().

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◆ setVertexSpecificEditableAPTable()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.setVertexSpecificEditableAPTable ( boolean editable )

Definition at line 394 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.vertexSpecificAPTabEditable.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer().

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◆ updateAPsMapAndTable()

void denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable ( )

private

Uses the AP of the Fragment to create a new map and table of APs.

Definition at line 468 of file VertexAsTwoDimStructureViewPanel.java.

References denoptim.gui.VertexAsTwoDimStructureViewPanel.activateTabEditsListener(), denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel, denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable(), denoptim.graph.Vertex.getAttachmentPoints(), denoptim.gui.VertexAsTwoDimStructureViewPanel.mapAPs, and denoptim.gui.VertexAsTwoDimStructureViewPanel.vertex.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer().

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Member Data Documentation

◆ alteredAPData

boolean denoptim.gui.VertexAsTwoDimStructureViewPanel.alteredAPData = false

Flag signaling that data about APs has been changed in the GUI.

Definition at line 100 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.deprotectEdits(), denoptim.gui.VertexAsTwoDimStructureViewPanel.hasUnsavedAPEdits(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.PausableTableModelListener.tableChanged().

◆ apTable

JTable denoptim.gui.VertexAsTwoDimStructureViewPanel.apTable

protected

Definition at line 106 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.getSelectedAPIDs(), denoptim.gui.VertexAsTwoDimStructureViewPanel.getSelectedAPs(), denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.preSelectAPs().

◆ apTabModel

DefaultTableModel denoptim.gui.VertexAsTwoDimStructureViewPanel.apTabModel

protected

Definition at line 105 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.activateTabEditsListener(), denoptim.gui.VertexAsTwoDimStructureViewPanel.clearAPTable(), denoptim.gui.VertexAsTwoDimStructureViewPanel.getAPTableModel(), denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable().

◆ editableAPTable

boolean denoptim.gui.VertexAsTwoDimStructureViewPanel.editableAPTable = false

private

Definition at line 109 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.VertexAsTwoDimStructureViewPanel().

◆ mapAPs

Map<Integer, AttachmentPoint> denoptim.gui.VertexAsTwoDimStructureViewPanel.mapAPs = null

protected

Temporary list of attachment points of the current fragment.

Definition at line 95 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.getMapOfAPsInTable(), denoptim.gui.VertexAsTwoDimStructureViewPanel.getSelectedAPs(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable().

◆ serialVersionUID

final long denoptim.gui.VertexAsTwoDimStructureViewPanel.serialVersionUID = 1L

staticprivate

Version UID.

Definition at line 85 of file VertexAsTwoDimStructureViewPanel.java.

◆ tabPanel

JScrollPane denoptim.gui.VertexAsTwoDimStructureViewPanel.tabPanel

private

Definition at line 104 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize().

◆ twoDimView

JPanel denoptim.gui.VertexAsTwoDimStructureViewPanel.twoDimView

private

Definition at line 103 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.clearPanel(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexStructure().

◆ vertex

Vertex denoptim.gui.VertexAsTwoDimStructureViewPanel.vertex

private

The currently loaded fragment.

Definition at line 90 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexStructure(), denoptim.gui.VertexAsTwoDimStructureViewPanel.loadVertexToViewer(), denoptim.gui.VertexAsTwoDimStructureViewPanel.preSelectAPs(), denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel.TwoDimStructurePanel(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.updateAPsMapAndTable().

◆ vertexSpecificAPTabEditable

boolean denoptim.gui.VertexAsTwoDimStructureViewPanel.vertexSpecificAPTabEditable = true

private

Definition at line 112 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.initialize(), and denoptim.gui.VertexAsTwoDimStructureViewPanel.setVertexSpecificEditableAPTable().

◆ viewPanel

JScrollPane denoptim.gui.VertexAsTwoDimStructureViewPanel.viewPanel

private

Definition at line 102 of file VertexAsTwoDimStructureViewPanel.java.

Referenced by denoptim.gui.VertexAsTwoDimStructureViewPanel.clearPanel().

The documentation for this class was generated from the following file:

/github/workspace/src/main/java/denoptim/gui/VertexAsTwoDimStructureViewPanel.java

Classes

Public Member Functions

Public Attributes

Protected Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ VertexAsTwoDimStructureViewPanel() [1/2]

◆ VertexAsTwoDimStructureViewPanel() [2/2]

Member Function Documentation

◆ activateTabEditsListener()

◆ clearAll()

◆ clearAPTable()

◆ clearPanel()

◆ deprotectEdits()

◆ getAPTableModel()

◆ getMapOfAPsInTable()

◆ getSelectedAPIDs()

◆ getSelectedAPs()

◆ hasUnsavedAPEdits()

◆ initialize()

◆ loadVertexStructure()

◆ loadVertexToViewer()

◆ preSelectAPs()

◆ setVertexSpecificEditableAPTable()

◆ updateAPsMapAndTable()

Member Data Documentation

◆ alteredAPData

◆ apTable

◆ apTabModel

◆ editableAPTable

◆ mapAPs

◆ serialVersionUID

◆ tabPanel

◆ twoDimView

◆ vertex

◆ vertexSpecificAPTabEditable

◆ viewPanel