denoptim.gui.GUIPreferences Class Reference

The collection of tunable preferences. More...

Collaboration diagram for denoptim.gui.GUIPreferences:

Classes
enum	SMITo3DEngine
	Available engines used to do SMILES-to-3D conversion. More...

Static Public Attributes
static TreeSet< String >	chosenSDFTags = new TreeSet<String>()
	MolecularViewer: list of SDF tags specifying which properties to display. More...
static Map< String, String >	defualtSDFTags
	MolecularViewer: default list of SDF tags with corresponding string to display instead of tag. More...

Static Protected Attributes
static int	graphLabelFontSize = 10
	Graph visualization: font size of labels. More...
static int	graphNodeSize = 30
	Graph visualization: size of nodes. More...
static int	chartPointSize = 8
	Evolutionary Inspector: size of points. More...
static String	tmpSpace = "/tmp"
	Readable/writable space for tmp files. More...
static SMITo3DEngine	smiTo3dResolver
	Selects the engine used to do SMILES-to-3D conversion. More...
static boolean	showLegenInEvolutionPlot = false
	Choice of displaying legend in evolution plot. More...
static boolean	showLegenInMonitorPlot = false
	Choice of displaying legend in monitor plot. More...
static File	lastCutRulesFile
	File with last used cutting rules. More...

Static Package Functions
	[static initializer]

Detailed Description

The collection of tunable preferences.

Author

Marco Foscato

Definition at line 36 of file GUIPreferences.java.

Member Function Documentation

[static initializer]()

denoptim.gui.GUIPreferences.[static initializer]

staticpackage

References denoptim.gui.GUIPreferences.chosenSDFTags, denoptim.gui.GUIPreferences.defualtSDFTags, denoptim.constants.DENOPTIMConstants.FITNESSTAG, denoptim.constants.DENOPTIMConstants.MOLERRORTAG, denoptim.constants.DENOPTIMConstants.PROVENANCE, and denoptim.constants.DENOPTIMConstants.UNIQUEIDTAG.

Member Data Documentation

chartPointSize

int denoptim.gui.GUIPreferences.chartPointSize = 8

staticprotected

Evolutionary Inspector: size of points.

Definition at line 51 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), denoptim.gui.GUIInspectFSERun.importFSERunData(), and denoptim.gui.GUIInspectGARun.importGARunData().

chosenSDFTags

TreeSet<String> denoptim.gui.GUIPreferences.chosenSDFTags = new TreeSet<String>()

static

MolecularViewer: list of SDF tags specifying which properties to display.

Definition at line 56 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferences.[static initializer](), denoptim.gui.MoleculeViewPanel.fillDataTable(), denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), and denoptim.gui.MoleculeViewPanel.showPopup().

defualtSDFTags

Map<String,String> denoptim.gui.GUIPreferences.defualtSDFTags

static

MolecularViewer: default list of SDF tags with corresponding string to display instead of tag.

Definition at line 62 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferences.[static initializer](), denoptim.gui.MoleculeViewPanel.fillDataTable(), and denoptim.gui.MoleculeViewPanel.showPopup().

graphLabelFontSize

int denoptim.gui.GUIPreferences.graphLabelFontSize = 10

staticprotected

Graph visualization: font size of labels.

Definition at line 41 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), and denoptim.gui.GraphViewerPanel.loadGraphToViewer().

graphNodeSize

int denoptim.gui.GUIPreferences.graphNodeSize = 30

staticprotected

Graph visualization: size of nodes.

Definition at line 46 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog().

lastCutRulesFile

File denoptim.gui.GUIPreferences.lastCutRulesFile

staticprotected

File with last used cutting rules.

Definition at line 106 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIVertexInspector.dialogToDefineCuttingRules().

showLegenInEvolutionPlot

boolean denoptim.gui.GUIPreferences.showLegenInEvolutionPlot = false

staticprotected

Choice of displaying legend in evolution plot.

Definition at line 96 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), and denoptim.gui.GUIInspectGARun.importGARunData().

showLegenInMonitorPlot

boolean denoptim.gui.GUIPreferences.showLegenInMonitorPlot = false

staticprotected

Choice of displaying legend in monitor plot.

Definition at line 101 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIInspectGARun.buildAndFillMonitorPlot(), and denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog().

smiTo3dResolver

SMITo3DEngine denoptim.gui.GUIPreferences.smiTo3dResolver

staticprotected

Initial value:

= 
            SMITo3DEngine.CACTVS

Selects the engine used to do SMILES-to-3D conversion.

Definition at line 90 of file GUIPreferences.java.

Referenced by denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), and denoptim.gui.FragmentViewPanel.loadSMILES().

tmpSpace

String denoptim.gui.GUIPreferences.tmpSpace = "/tmp"

staticprotected

Readable/writable space for tmp files.

Definition at line 80 of file GUIPreferences.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.getTmpFileForCuttingRules(), denoptim.gui.GUIPreferencesDialog.GUIPreferencesDialog(), and denoptim.gui.GUIPrepare.prepareWorkSpace().

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The documentation for this class was generated from the following file:

• /github/workspace/src/main/java/denoptim/gui/GUIPreferences.java