A panel with a viewer capable of visualising DENOPTIM fragments and allows to create and edit fragments. More...

Inheritance diagram for denoptim.gui.GUIVertexInspector:

Collaboration diagram for denoptim.gui.GUIVertexInspector:

Classes
class	VrtxSpinnerChangeEvent

Public Member Functions
	GUIVertexInspector (GUIMainPanel mainPanel)
	Constructor. More...

void	importStructureFromFile (File file)

void	importStructureFromSMILES (String smiles)
	Imports the given SMILES into the viewer. More...

void	importVerticesFromFile (File file)
	Imports fragments from a file. More...

void	importVertices (List< Vertex > fragments)
	Imports vertices. More...

boolean	hasUnsavedChanges ()
	Check whether there are unsaved changes. More...

void	dispose ()

Public Member Functions inherited from denoptim.gui.GUICardPanel
	GUICardPanel (GUIMainPanel mainPanel, String newPanelName)
	Constructor for JPanel meant to be a single "card" in the deck of cards. More...

boolean	hasUnsavedChanges ()
	Check for unsaved changes in the components included in this card. More...

Static Public Member Functions
static boolean	dialogToDefineCuttingRules (FragmenterParameters settings, ClassLoader classLoader, Component parent, boolean setMolToGraphSettings)
	Starts a dialog to define the on-the-fly fragmentation settings. More...

static List< APClass >	choseOrCreateNewAPClass (JComponent parent, boolean singleSelection)
	Runs a dialog aimed at selecting an existing APClass or defining a new one. More...

static String	ensureGoodAPRuleString (String currApRule, String title, boolean mustReply, JComponent parent) throws DENOPTIMException
	Forces the user to specify a properly formatted APRule, i.e., the first component of an APClass. More...

Static Public Attributes
static AtomicInteger	prepVrtxTabUID = new AtomicInteger(1)
	Unique identified for instances of this inspector. More...

Private Member Functions
void	initialize ()
	Initialize the panel and add buttons. More...

void	loadCurrentVrtxIdxToViewer ()
	Loads the fragments corresponding to the field index. More...

void	clearCurrentSystem ()

void	updateVrtxListSpinner ()

boolean	convertAtomToAP (IAtom trgAtm, String ruleAndSubClass)
	Removes an atom and replaces it with an attachment point. More...

void	removeAtoms (ArrayList< IAtom > atmsToDels)

void	deprotectEditedSystem ()

void	protectEditedSystem ()

void	activateTabEditsListener (boolean var)

void	removeCurrentVrtx () throws DENOPTIMException

void	saveUnsavedChanges ()

Private Attributes
ArrayList< Vertex >	verticesLibrary = new ArrayList<Vertex>()
	The currently loaded list of fragments. More...

Vertex	vertex
	The currently loaded vertex. More...

int	currVrtxIdx = 0
	The index of the currently loaded fragment [0–(n-1)}. More...

boolean	unsavedChanges = false
	Flag signaling that loaded data has changes since last save. More...

VertexViewPanel	vertexViewer

JPanel	ctrlPane

JPanel	navigPanel

JPanel	navigPanel2

JPanel	navigPanel3

JButton	btnAddVrtx

JButton	btnDelVrtx

JButton	btnOpenVrtxs

JSpinner	navigSpinner

JLabel	totalVrtxsLabel

final VrtxSpinnerChangeEvent	vrtxSpinnerListener

JPanel	pnlImportStruct

JButton	btnOpenMol

JButton	btnOpenSMILES

JPanel	pnlEmptFrag

JButton	btnEmptFrag

JPanel	pnlAtmToAP

JButton	btnAtmToAP

JPanel	pnlChop

JButton	btnChop

JPanel	pnlDelSel

JButton	btnDelSel

JPanel	pnlSaveEdits

JButton	btnSaveEdits

Static Private Attributes
static final long	serialVersionUID = 912850110991449553L
	Version UID. More...

Additional Inherited Members
Protected Attributes inherited from denoptim.gui.GUICardPanel
GUIMainPanel	mainPanel
	The main panel (cards deck) More...

Detailed Description

A panel with a viewer capable of visualising DENOPTIM fragments and allows to create and edit fragments.

The molecular viewer is provided by Jmol.

Author: Marco Foscato

Definition at line 92 of file GUIVertexInspector.java.

Constructor & Destructor Documentation

◆ GUIVertexInspector()

denoptim.gui.GUIVertexInspector.GUIVertexInspector ( GUIMainPanel mainPanel )

Constructor.

Definition at line 165 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUICardPanel.mainPanel, and denoptim.gui.GUIVertexInspector.prepVrtxTabUID.

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Member Function Documentation

◆ activateTabEditsListener()

void denoptim.gui.GUIVertexInspector.activateTabEditsListener ( boolean var )

private

Definition at line 1360 of file GUIVertexInspector.java.

References denoptim.gui.VertexViewPanel.activateTabEditsListener(), and denoptim.gui.GUIVertexInspector.vertexViewer.

Referenced by denoptim.gui.GUIVertexInspector.saveUnsavedChanges(), and denoptim.gui.GUIVertexInspector.VrtxSpinnerChangeEvent.stateChanged().

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◆ choseOrCreateNewAPClass()

static List< APClass > denoptim.gui.GUIVertexInspector.choseOrCreateNewAPClass	(	JComponent	parent,
		boolean	singleSelection
	)

static

Runs a dialog aimed at selecting an existing APClass or defining a new one.

Parameters

parent	the component the dialog window will the bound to.
singleSelection	use `true` to restrict the choice to a single APClass.

Returns

Definition at line 1532 of file GUIVertexInspector.java.

References denoptim.graph.APClass.getAllAPClassesAsString(), denoptim.graph.APClass.make(), and denoptim.gui.GUIModalDialog.showDialog().

Referenced by denoptim.gui.GUIEmptyVertexMaker.GUIEmptyVertexMaker(), and denoptim.gui.GUIVertexInspector.initialize().

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◆ clearCurrentSystem()

void denoptim.gui.GUIVertexInspector.clearCurrentSystem ( )

private

Definition at line 1142 of file GUIVertexInspector.java.

References denoptim.gui.VertexViewPanel.clearCurrentSystem(), denoptim.gui.GUIVertexInspector.vertex, and denoptim.gui.GUIVertexInspector.vertexViewer.

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer(), and denoptim.gui.GUIVertexInspector.removeCurrentVrtx().

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◆ convertAtomToAP()

boolean denoptim.gui.GUIVertexInspector.convertAtomToAP	(	IAtom	trgAtm,
		String	ruleAndSubClass
	)

private

Removes an atom and replaces it with an attachment point.

Parameters

ruleAndSubClass	the attachment point class of the new AP. This must be a valid string as we do not check for validity. We assume the check has been done already.
trgAtm

Returns: true if the conversion was successful

Definition at line 1169 of file GUIVertexInspector.java.

References denoptim.graph.Fragment.addAPOnAtom(), denoptim.graph.Fragment.getConnectedAtomsCount(), denoptim.graph.Fragment.getConnectedAtomsList(), denoptim.utils.MoleculeUtils.getPoint3d(), denoptim.graph.Fragment.indexOf(), denoptim.graph.APClass.make(), denoptim.constants.DENOPTIMConstants.SEPARATORAPPROPSCL, and denoptim.gui.GUIVertexInspector.vertex.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ deprotectEditedSystem()

void denoptim.gui.GUIVertexInspector.deprotectEditedSystem ( )

private

Definition at line 1306 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), and denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

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◆ dialogToDefineCuttingRules()

static boolean denoptim.gui.GUIVertexInspector.dialogToDefineCuttingRules	(	FragmenterParameters	settings,
		ClassLoader	classLoader,
		Component	parent,
		boolean	setMolToGraphSettings
	)

static

Starts a dialog to define the on-the-fly fragmentation settings.

Parameters

settings	where settings will be stored
classLoader	used to find resources
parent	used to place dialog windows in the relevant position.
setMolToGraphSettings	if `true` enabled the setting of parameters that make sense only when we convert molecules to `DGraph`s.

Returns: true if it all went well.

Definition at line 834 of file GUIVertexInspector.java.

References denoptim.programs.fragmenter.FragmenterParameters.getCuttingRulesFilePathname(), denoptim.gui.GUIPreferences.lastCutRulesFile, denoptim.io.DenoptimIO.readCuttingRules(), denoptim.gui.GUIModalDialog.result, and denoptim.programs.RunTimeParameters.startConsoleLogger().

Referenced by denoptim.gui.GUIGraphHandler.initialize(), and denoptim.gui.GUIVertexInspector.initialize().

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◆ dispose()

void denoptim.gui.GUIVertexInspector.dispose ( )

Definition at line 1681 of file GUIVertexInspector.java.

References denoptim.gui.VertexViewPanel.dispose(), and denoptim.gui.GUIVertexInspector.vertexViewer.

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◆ ensureGoodAPRuleString()

static String denoptim.gui.GUIVertexInspector.ensureGoodAPRuleString	(	String	currApRule,
		String	title,
		boolean	mustReply,
		JComponent	parent
	)		throws DENOPTIMException

static

Forces the user to specify a properly formatted APRule, i.e., the first component of an APClass.

Parameters

currApRule	the current value of the APRule, or empty string
mustReply	set to `true` to prevent escaping the question

Returns

Exceptions

DENOPTIMException is the used did not choose a valid value.

Definition at line 1625 of file GUIVertexInspector.java.

References denoptim.graph.APClass.isValidAPRuleString().

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◆ hasUnsavedChanges()

boolean denoptim.gui.GUIVertexInspector.hasUnsavedChanges ( )

Check whether there are unsaved changes.

Returns: true if there are unsaved changes.

Reimplemented from denoptim.gui.GUICardPanel.

Definition at line 1671 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.unsavedChanges.

◆ importStructureFromFile()

void denoptim.gui.GUIVertexInspector.importStructureFromFile ( File file )

Definition at line 927 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ importStructureFromSMILES()

void denoptim.gui.GUIVertexInspector.importStructureFromSMILES ( String smiles )

Imports the given SMILES into the viewer.

As SMILES cannot hold attachment points (APs), no AP will be created and the resulting system is a plain molecule instead of a fragment.

Parameters

smiles the SMILES string

Definition at line 979 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ importVertices()

void denoptim.gui.GUIVertexInspector.importVertices ( List< Vertex > fragments )

Imports vertices.

Parameters

fragments the list of vertices to import

Definition at line 1058 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.currVrtxIdx, denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer(), denoptim.gui.GUIVertexInspector.updateVrtxListSpinner(), and denoptim.gui.GUIVertexInspector.verticesLibrary.

Referenced by denoptim.gui.GUIVertexInspector.importVerticesFromFile(), and denoptim.gui.GUIVertexInspector.initialize().

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◆ importVerticesFromFile()

void denoptim.gui.GUIVertexInspector.importVerticesFromFile ( File file )

Imports fragments from a file.

Parameters

file	the file to open

Definition at line 1018 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.btnAddVrtx, denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.gui.GUIVertexInspector.importVertices(), and denoptim.io.DenoptimIO.readVertexes().

Referenced by denoptim.gui.MainToolBar.openFile().

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◆ initialize()

void denoptim.gui.GUIVertexInspector.initialize ( )

private

Initialize the panel and add buttons.

Definition at line 177 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.GUIVertexInspector().

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◆ loadCurrentVrtxIdxToViewer()

void denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer ( )

private

Loads the fragments corresponding to the field index.

The molecular data is loaded in the Jmol viewer, and the attachment point (AP) information in the the list of APs. Jmol is not aware of AP-related information, so this also launches the generation of the graphical objects representing the APs.

Definition at line 1114 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.btnAtmToAP, denoptim.gui.GUIVertexInspector.btnDelSel, denoptim.gui.GUIVertexInspector.clearCurrentSystem(), denoptim.gui.GUIVertexInspector.currVrtxIdx, denoptim.gui.VertexViewPanel.loadVertexToViewer(), denoptim.gui.GUIVertexInspector.vertex, denoptim.gui.GUIVertexInspector.vertexViewer, and denoptim.gui.GUIVertexInspector.verticesLibrary.

Referenced by denoptim.gui.GUIVertexInspector.importVertices(), denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), denoptim.gui.GUIVertexInspector.saveUnsavedChanges(), and denoptim.gui.GUIVertexInspector.VrtxSpinnerChangeEvent.stateChanged().

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◆ protectEditedSystem()

void denoptim.gui.GUIVertexInspector.protectEditedSystem ( )

private

Definition at line 1335 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ removeAtoms()

void denoptim.gui.GUIVertexInspector.removeAtoms ( ArrayList< IAtom > atmsToDels )

private

Definition at line 1233 of file GUIVertexInspector.java.

References denoptim.constants.DENOPTIMConstants.ATMPROPAPS, denoptim.graph.Fragment.bonds(), denoptim.graph.Fragment.getAPsFromAtom(), denoptim.graph.Fragment.getAttachmentPoints(), denoptim.graph.Fragment.removeAtom(), denoptim.graph.Fragment.removeBond(), denoptim.graph.Fragment.updateAPs(), and denoptim.gui.GUIVertexInspector.vertex.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ removeCurrentVrtx()

void denoptim.gui.GUIVertexInspector.removeCurrentVrtx ( ) throws DENOPTIMException

private

Definition at line 1367 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ saveUnsavedChanges()

void denoptim.gui.GUIVertexInspector.saveUnsavedChanges ( )

private

Definition at line 1426 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

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◆ updateVrtxListSpinner()

void denoptim.gui.GUIVertexInspector.updateVrtxListSpinner ( )

private

Definition at line 1151 of file GUIVertexInspector.java.

References denoptim.gui.GUIVertexInspector.currVrtxIdx, denoptim.gui.GUIVertexInspector.navigSpinner, denoptim.gui.GUIVertexInspector.totalVrtxsLabel, and denoptim.gui.GUIVertexInspector.verticesLibrary.

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.importVertices(), and denoptim.gui.GUIVertexInspector.removeCurrentVrtx().

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Member Data Documentation

◆ btnAddVrtx

JButton denoptim.gui.GUIVertexInspector.btnAddVrtx

private

Definition at line 130 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.importVerticesFromFile(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

◆ btnAtmToAP

JButton denoptim.gui.GUIVertexInspector.btnAtmToAP

private

Definition at line 148 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer().

◆ btnChop

JButton denoptim.gui.GUIVertexInspector.btnChop

private

Definition at line 151 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ btnDelSel

JButton denoptim.gui.GUIVertexInspector.btnDelSel

private

Definition at line 154 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer().

◆ btnDelVrtx

JButton denoptim.gui.GUIVertexInspector.btnDelVrtx

private

Definition at line 131 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ btnEmptFrag

JButton denoptim.gui.GUIVertexInspector.btnEmptFrag

private

Definition at line 145 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

◆ btnOpenMol

JButton denoptim.gui.GUIVertexInspector.btnOpenMol

private

Definition at line 141 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

◆ btnOpenSMILES

JButton denoptim.gui.GUIVertexInspector.btnOpenSMILES

private

Definition at line 142 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

◆ btnOpenVrtxs

JButton denoptim.gui.GUIVertexInspector.btnOpenVrtxs

private

Definition at line 133 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

◆ btnSaveEdits

JButton denoptim.gui.GUIVertexInspector.btnSaveEdits

private

Definition at line 157 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.protectEditedSystem(), and denoptim.gui.GUIVertexInspector.saveUnsavedChanges().

◆ ctrlPane

JPanel denoptim.gui.GUIVertexInspector.ctrlPane

private

Definition at line 125 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ currVrtxIdx

int denoptim.gui.GUIVertexInspector.currVrtxIdx = 0

private

The index of the currently loaded fragment [0–(n-1)}.

Definition at line 117 of file GUIVertexInspector.java.

◆ navigPanel

JPanel denoptim.gui.GUIVertexInspector.navigPanel

private

Definition at line 126 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ navigPanel2

JPanel denoptim.gui.GUIVertexInspector.navigPanel2

private

Definition at line 127 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ navigPanel3

JPanel denoptim.gui.GUIVertexInspector.navigPanel3

private

Definition at line 128 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ navigSpinner

JSpinner denoptim.gui.GUIVertexInspector.navigSpinner

private

Definition at line 135 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.protectEditedSystem(), denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), denoptim.gui.GUIVertexInspector.saveUnsavedChanges(), denoptim.gui.GUIVertexInspector.VrtxSpinnerChangeEvent.stateChanged(), and denoptim.gui.GUIVertexInspector.updateVrtxListSpinner().

◆ pnlAtmToAP

JPanel denoptim.gui.GUIVertexInspector.pnlAtmToAP

private

Definition at line 147 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ pnlChop

JPanel denoptim.gui.GUIVertexInspector.pnlChop

private

Definition at line 150 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ pnlDelSel

JPanel denoptim.gui.GUIVertexInspector.pnlDelSel

private

Definition at line 153 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ pnlEmptFrag

JPanel denoptim.gui.GUIVertexInspector.pnlEmptFrag

private

Definition at line 144 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ pnlImportStruct

JPanel denoptim.gui.GUIVertexInspector.pnlImportStruct

private

Definition at line 140 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ pnlSaveEdits

JPanel denoptim.gui.GUIVertexInspector.pnlSaveEdits

private

Definition at line 156 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize().

◆ prepVrtxTabUID

AtomicInteger denoptim.gui.GUIVertexInspector.prepVrtxTabUID = new AtomicInteger(1)

static

Unique identified for instances of this inspector.

Definition at line 102 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.GUIVertexInspector().

◆ serialVersionUID

final long denoptim.gui.GUIVertexInspector.serialVersionUID = 912850110991449553L

staticprivate

Version UID.

Definition at line 97 of file GUIVertexInspector.java.

◆ totalVrtxsLabel

JLabel denoptim.gui.GUIVertexInspector.totalVrtxsLabel

private

Definition at line 136 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), and denoptim.gui.GUIVertexInspector.updateVrtxListSpinner().

◆ unsavedChanges

boolean denoptim.gui.GUIVertexInspector.unsavedChanges = false

private

Flag signaling that loaded data has changes since last save.

Definition at line 122 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.hasUnsavedChanges(), denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), and denoptim.gui.GUIVertexInspector.initialize().

◆ vertex

Vertex denoptim.gui.GUIVertexInspector.vertex

private

The currently loaded vertex.

Definition at line 112 of file GUIVertexInspector.java.

◆ vertexViewer

VertexViewPanel denoptim.gui.GUIVertexInspector.vertexViewer

private

Definition at line 124 of file GUIVertexInspector.java.

◆ verticesLibrary

ArrayList<Vertex> denoptim.gui.GUIVertexInspector.verticesLibrary = new ArrayList<Vertex>()

private

The currently loaded list of fragments.

Definition at line 107 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.importStructureFromFile(), denoptim.gui.GUIVertexInspector.importStructureFromSMILES(), denoptim.gui.GUIVertexInspector.importVertices(), denoptim.gui.GUIVertexInspector.initialize(), denoptim.gui.GUIVertexInspector.loadCurrentVrtxIdxToViewer(), denoptim.gui.GUIVertexInspector.removeCurrentVrtx(), denoptim.gui.GUIVertexInspector.saveUnsavedChanges(), and denoptim.gui.GUIVertexInspector.updateVrtxListSpinner().

◆ vrtxSpinnerListener

final VrtxSpinnerChangeEvent denoptim.gui.GUIVertexInspector.vrtxSpinnerListener

private

Initial value:

=

new VrtxSpinnerChangeEvent()

Definition at line 137 of file GUIVertexInspector.java.

Referenced by denoptim.gui.GUIVertexInspector.deprotectEditedSystem(), denoptim.gui.GUIVertexInspector.initialize(), and denoptim.gui.GUIVertexInspector.protectEditedSystem().

The documentation for this class was generated from the following file:

/github/workspace/src/main/java/denoptim/gui/GUIVertexInspector.java

Classes

Public Member Functions

Static Public Member Functions

Static Public Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ GUIVertexInspector()

Member Function Documentation

◆ activateTabEditsListener()

◆ choseOrCreateNewAPClass()

◆ clearCurrentSystem()

◆ convertAtomToAP()

◆ deprotectEditedSystem()

◆ dialogToDefineCuttingRules()

◆ dispose()

◆ ensureGoodAPRuleString()

◆ hasUnsavedChanges()

◆ importStructureFromFile()

◆ importStructureFromSMILES()

◆ importVertices()

◆ importVerticesFromFile()

◆ initialize()

◆ loadCurrentVrtxIdxToViewer()

◆ protectEditedSystem()

◆ removeAtoms()

◆ removeCurrentVrtx()

◆ saveUnsavedChanges()

◆ updateVrtxListSpinner()

Member Data Documentation

◆ btnAddVrtx

◆ btnAtmToAP

◆ btnChop

◆ btnDelSel

◆ btnDelVrtx

◆ btnEmptFrag

◆ btnOpenMol

◆ btnOpenSMILES

◆ btnOpenVrtxs

◆ btnSaveEdits

◆ ctrlPane

◆ currVrtxIdx

◆ navigPanel

◆ navigPanel2

◆ navigPanel3

◆ navigSpinner

◆ pnlAtmToAP

◆ pnlChop

◆ pnlDelSel

◆ pnlEmptFrag

◆ pnlImportStruct

◆ pnlSaveEdits

◆ prepVrtxTabUID

◆ serialVersionUID

◆ totalVrtxsLabel

◆ unsavedChanges

◆ vertex

◆ vertexViewer

◆ verticesLibrary

◆ vrtxSpinnerListener