A modal dialog to define parameters for fragmentation and fragment filtering. More...

Inheritance diagram for denoptim.gui.CuttingRulesSelectionDialog:

Collaboration diagram for denoptim.gui.CuttingRulesSelectionDialog:

Classes
class	MyJSVGCanvas
	Special canvas that overrides the set interpretation of mouse+key input to achieve a simplified zoom/pan capability using only BUTTON1 and SHIFT or CTRL keys. More...

class	SMARTSVisualizationButton
	A button that opens a modal dialog displaying the PNGs with a visual representation of SMARTS queries that are selected in the table given upon construction. More...

Public Member Functions
	CuttingRulesSelectionDialog (List< CuttingRule > defaultCuttingRules, List< CuttingRule > customCuttingRules, boolean preselectDefault, Component refForPlacement, FragmenterParameters settings)
	Constructor. More...

Public Member Functions inherited from denoptim.gui.GUIModalDialog
	GUIModalDialog (Component refForPlacement)
	Constructor. More...

	GUIModalDialog (Component refForPlacement, boolean useExtraButton)
	Constructor. More...

Object	showDialog ()
	Shows the dialog and restrains the modality to it, until the dialog gets closed. More...

void	addToNorthPane (JComponent comp)
	Adds a component to the topmost part of this dialog frame. More...

void	addToCentralPane (JComponent comp)
	Adds a component to the central part of this dialog frame. More...

Protected Member Functions
void	saveResults ()

void	appendToCentralPanel (JComponent panel)
	Method to append a panel to the bottom of the central panel. More...

Protected Member Functions inherited from denoptim.gui.GUIModalDialog
void	close ()
	Closes the dialog window. More...

Protected Attributes
JPanel	centralPanel = new JPanel(new BorderLayout())
	The panel in the central part of the dialog. More...

File	lastUsedCutRulFile = null
	The file where we last saved cutting rules different from the default. More...

final int	preferredHeight
	Default text field height. More...

final Dimension	strFieldSize = new Dimension(200, preferredHeight)
	Default sizes for mid-long text. More...

JTextField	txtLinearity
	User-controlled definition of the linearity limit. More...

List< CuttingRule >	chosenOnes
	Chosen set of rules. More...

FragmenterParameters	frgParams
	Parameter storage were we store parameters. More...

Protected Attributes inherited from denoptim.gui.GUIModalDialog
JButton	btnDone
	The button that is used to launch the processing of the data given to the open dialog, and close the dialog window. More...

JButton	btnCanc
	The button that is used to close the dialog without processing any input. More...

JButton	btnExtra
	The button that can be used for any action that does not close the dialog. More...

Object	result = null
	The result to be returned once the dialog is closed. More...

Private Member Functions
String	escapeCharactersForSMARTSViewer (String smarts)
	Escaping some characters as explained in https://smarts.plus/rest. More...

void	buildCustomRulesTable (List< CuttingRule > customCuttingRules, String[] emptyRow)

File	getTmpFileForCuttingRules () throws DENOPTIMException

Private Attributes
JRadioButton	rdbUseDefault

JRadioButton	rdbUseCustom

DefaultTableModel	defaultRulesTabModel

DefaultTableModel	customRulesTabModel

File	nextWrittenCutRulFile = null
	The file where we will save next edited list of cutting rules. More...

Static Private Attributes
static final long	serialVersionUID = 1L
	Version ID. More...

Detailed Description

A modal dialog to define parameters for fragmentation and fragment filtering.

This dialog allows to control only a limited set of parameters compared to the full capacity of FragmenterParameters. This because many of the parameters in the latter have no sense to exist in an interactive, GUI-controlled fragmentation.

Definition at line 84 of file CuttingRulesSelectionDialog.java.

Constructor & Destructor Documentation

◆ CuttingRulesSelectionDialog()

denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog	(	List< CuttingRule >	defaultCuttingRules,
		List< CuttingRule >	customCuttingRules,
		boolean	preselectDefault,
		Component	refForPlacement,
		FragmenterParameters	settings
	)

Constructor.

Exceptions

DENOPTIMException

Definition at line 147 of file CuttingRulesSelectionDialog.java.

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Member Function Documentation

◆ appendToCentralPanel()

void denoptim.gui.CuttingRulesSelectionDialog.appendToCentralPanel ( JComponent panel )

protected

Method to append a panel to the bottom of the central panel.

Parameters

panel

Definition at line 628 of file CuttingRulesSelectionDialog.java.

References denoptim.gui.CuttingRulesSelectionDialog.centralPanel.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), and denoptim.gui.MolToGraphParametersDialog.MolToGraphParametersDialog().

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◆ buildCustomRulesTable()

void denoptim.gui.CuttingRulesSelectionDialog.buildCustomRulesTable	(	List< CuttingRule >	customCuttingRules,
		String[]	emptyRow
	)

private

Definition at line 875 of file CuttingRulesSelectionDialog.java.

References denoptim.gui.CuttingRulesSelectionDialog.customRulesTabModel.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

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◆ escapeCharactersForSMARTSViewer()

String denoptim.gui.CuttingRulesSelectionDialog.escapeCharactersForSMARTSViewer ( String smarts )

private

Escaping some characters as explained in https://smarts.plus/rest.

Definition at line 861 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.SMARTSVisualizationButton.SMARTSVisualizationButton().

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◆ getTmpFileForCuttingRules()

File denoptim.gui.CuttingRulesSelectionDialog.getTmpFileForCuttingRules ( ) throws DENOPTIMException

private

Definition at line 904 of file CuttingRulesSelectionDialog.java.

References denoptim.files.FileUtils.getAvailableFileName(), and denoptim.gui.GUIPreferences.tmpSpace.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

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◆ saveResults()

void denoptim.gui.CuttingRulesSelectionDialog.saveResults ( )

protected

Reimplemented in denoptim.gui.MolToGraphParametersDialog.

Definition at line 609 of file CuttingRulesSelectionDialog.java.

References denoptim.gui.CuttingRulesSelectionDialog.chosenOnes, denoptim.gui.CuttingRulesSelectionDialog.frgParams, denoptim.gui.CuttingRulesSelectionDialog.lastUsedCutRulFile, denoptim.gui.GUIModalDialog.result, denoptim.programs.fragmenter.FragmenterParameters.setCuttingRules(), denoptim.programs.fragmenter.FragmenterParameters.setCuttingRulesFilePathname(), denoptim.programs.fragmenter.FragmenterParameters.setLinearAngleLimit(), and denoptim.gui.CuttingRulesSelectionDialog.txtLinearity.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

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Member Data Documentation

◆ centralPanel

JPanel denoptim.gui.CuttingRulesSelectionDialog.centralPanel = new JPanel(new BorderLayout())

protected

The panel in the central part of the dialog.

This is where main content goes.

Definition at line 96 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.appendToCentralPanel(), and denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ chosenOnes

List<CuttingRule> denoptim.gui.CuttingRulesSelectionDialog.chosenOnes

protected

Chosen set of rules.

Definition at line 133 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), and denoptim.gui.CuttingRulesSelectionDialog.saveResults().

◆ customRulesTabModel

DefaultTableModel denoptim.gui.CuttingRulesSelectionDialog.customRulesTabModel

private

Definition at line 102 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.buildCustomRulesTable(), and denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ defaultRulesTabModel

DefaultTableModel denoptim.gui.CuttingRulesSelectionDialog.defaultRulesTabModel

private

Definition at line 101 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ frgParams

FragmenterParameters denoptim.gui.CuttingRulesSelectionDialog.frgParams

protected

Parameter storage were we store parameters.

Definition at line 138 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), denoptim.gui.CuttingRulesSelectionDialog.saveResults(), and denoptim.gui.MolToGraphParametersDialog.saveResults().

◆ lastUsedCutRulFile

File denoptim.gui.CuttingRulesSelectionDialog.lastUsedCutRulFile = null

protected

The file where we last saved cutting rules different from the default.

Definition at line 107 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), and denoptim.gui.CuttingRulesSelectionDialog.saveResults().

◆ nextWrittenCutRulFile

File denoptim.gui.CuttingRulesSelectionDialog.nextWrittenCutRulFile = null

private

The file where we will save next edited list of cutting rules.

Definition at line 112 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ preferredHeight

final int denoptim.gui.CuttingRulesSelectionDialog.preferredHeight

protected

Initial value:

=

(int) (new JTextField()).getPreferredSize().getHeight()

Default text field height.

Definition at line 117 of file CuttingRulesSelectionDialog.java.

◆ rdbUseCustom

JRadioButton denoptim.gui.CuttingRulesSelectionDialog.rdbUseCustom

private

Definition at line 99 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ rdbUseDefault

JRadioButton denoptim.gui.CuttingRulesSelectionDialog.rdbUseDefault

private

Definition at line 98 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog().

◆ serialVersionUID

final long denoptim.gui.CuttingRulesSelectionDialog.serialVersionUID = 1L

staticprivate

Version ID.

Definition at line 90 of file CuttingRulesSelectionDialog.java.

◆ strFieldSize

final Dimension denoptim.gui.CuttingRulesSelectionDialog.strFieldSize = new Dimension(200, preferredHeight)

protected

Default sizes for mid-long text.

Definition at line 123 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), and denoptim.gui.MolToGraphParametersDialog.MolToGraphParametersDialog().

◆ txtLinearity

JTextField denoptim.gui.CuttingRulesSelectionDialog.txtLinearity

protected

User-controlled definition of the linearity limit.

Definition at line 128 of file CuttingRulesSelectionDialog.java.

Referenced by denoptim.gui.CuttingRulesSelectionDialog.CuttingRulesSelectionDialog(), and denoptim.gui.CuttingRulesSelectionDialog.saveResults().

The documentation for this class was generated from the following file:

/github/workspace/src/main/java/denoptim/gui/CuttingRulesSelectionDialog.java

Classes

Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ CuttingRulesSelectionDialog()

Member Function Documentation

◆ appendToCentralPanel()

◆ buildCustomRulesTable()

◆ escapeCharactersForSMARTSViewer()

◆ getTmpFileForCuttingRules()

◆ saveResults()

Member Data Documentation

◆ centralPanel

◆ chosenOnes

◆ customRulesTabModel

◆ defaultRulesTabModel

◆ frgParams

◆ lastUsedCutRulFile

◆ nextWrittenCutRulFile

◆ preferredHeight

◆ rdbUseCustom

◆ rdbUseDefault

◆ serialVersionUID

◆ strFieldSize

◆ txtLinearity