denoptim.gui.GAParametersForm Class Reference

Form collecting input parameters for a genetic algorithm experiment. More...

Inheritance diagram for denoptim.gui.GAParametersForm:

Collaboration diagram for denoptim.gui.GAParametersForm:

Classes
enum	ProbabilityFuncitonShape
	The identifiers of probability function shapes that are available. More...

Public Member Functions
	GAParametersForm (Dimension d)
void	importParametersFromDenoptimParamsFile (String fileName) throws Exception
	Imports parameters from a properly formatted parameters file. More...
void	importSingleParameter (String key, String value) throws Exception
void	putParametersToString (StringBuilder sb) throws Exception
Public Member Functions inherited from denoptim.gui.ParametersForm
	ParametersForm ()
	Empty constructor. More...
void	importParametersFromDenoptimParamsFile (String fileName) throws Exception
void	importSingleParameter (String key, String value) throws Exception
void	putParametersToString (StringBuilder sb) throws Exception
boolean	hasUnsavedChanges ()
	Returns the flag signaling unsaved changes. More...
void	setUnsavedChanges (boolean val)
	Set the status of the flag signaling unsaved changes. More...
void	showUnknownKeyWarning (Component parent, String paramType)
	Shown a warning dialog that informs the user about having found text that is not present in the ParametersForm implementation and is treated as free text. More...
void	importParametersFromDenoptimParamsFile (String fileName) throws Exception
void	importSingleParameter (String key, String value) throws Exception
void	putParametersToString (StringBuilder sb) throws Exception
boolean	hasUnsavedChanges ()
void	setUnsavedChanges (boolean val)

Static Public Attributes
static AtomicInteger	gaFormUID = new AtomicInteger(1)
	Unique identified for instances of this form. More...

Package Attributes
JPanel	block
JPanel	localBlock1
JPanel	localBlock2
JPanel	advOptsBlock
JPanel	lineSrcOrNew
JRadioButton	rdbSrcOrNew
JPanel	lineGASource
JLabel	lblGASource
JTextField	txtGASource
JButton	btnGASource
JButton	btnLoadGASource
String	keyPar3 = "GA-RandomSeed"
JPanel	linePar3
JLabel	lblPar3
JTextField	txtPar3
String	keyPar1 = "GA-PrecisionLevel"
JPanel	linePar1
JLabel	lblPar1
JTextField	txtPar1
String	keyPar2 = "GA-Verbosity"
JPanel	linePar2
JLabel	lblPar2
JComboBox< String >	cmbPar2
String	keyPar5 = "GA-SortByIncreasingFitness"
JPanel	linePar5
JRadioButton	rdbPar5
String	keyPar6 = "GA-PopulationSize"
JPanel	linePar6
JLabel	lblPar6
JTextField	txtPar6
String	keyPar7 = "GA-NumChildren"
JPanel	linePar7
JLabel	lblPar7
JTextField	txtPar7
String	keyPar8 = "GA-NumGenerations"
JPanel	linePar8
JLabel	lblPar8
JTextField	txtPar8
String	keyPar9 = "GA-NumConvGen"
JPanel	linePar9
JLabel	lblPar9
JTextField	txtPar9
String	keyPar10 = "GA-MaxTriesPerPopulation"
JPanel	linePar10
JLabel	lblPar10
JTextField	txtPar10
JPanel	lineMolToGraph
JLabel	lblMolToGraph
JTextField	txtMolToGraph
JButton	btnMolToGraph
String	keyMolToGraph = "GA-InitMolsToFragmentFile"
JPanel	lineFrgMols
JLabel	lblFrgMols
JTextField	txtFrgMols
JButton	btnFrgMols
String	keyFrgMols = "FRG-CuttingRulesFile"
JPanel	lineAddH
JLabel	lblAddH
JRadioButton	rdbAddH
String	keyAddH = "FRG-AddExplicitHydrogen"
JPanel	lineGrowthPropMode
JLabel	lblGrowthPropMode
ButtonGroup	bgGrowthMode
JRadioButton	rbtLevelGrowth
JRadioButton	rbtMolSzGrowth
DefaultXYDataset	molSizeProbData
JFreeChart	graphMolSzProbJFChart
JPanel	graphMolSzProbJFChartChartPanel
JPanel	graphMolSzProbJFChartCtrlPanel
JPanel	graphMolSzProbSpinnerPane
Double	minMolSizeProbPlot = 1.0
Double	maxMolSizeProbPlot = 50.0
String	keyParMolSz1 = "GA-MolGrowthProbScheme"
JPanel	lineParMolSz1
JLabel	lblParMolSz1
JComboBox< ProbabilityFuncitonShape >	cmbParMolSz1
String	keyParMolSz2 = "GA-MolGrowthMultiplier"
JPanel	lineParMolSz2
JLabel	lblParMolSz2
JSpinner	spnParMolSz2
String	keyParMolSz3 = "GA-MolGrowthSigmaSteepness"
JPanel	lineParMolSz3
JLabel	lblParMolSz3
JSpinner	spnParMolSz3
String	keyParMolSz4 = "GA-MolGrowthSigmaMiddle"
JPanel	lineParMolSz4
JLabel	lblParMolSz4
JSpinner	spnParMolSz4
JPanel	localBlockMolSz3
JPanel	localBlockMolSz4
JPanel	localBlockMolSzGraph
JPanel	localBlockMolSzAll
DefaultXYDataset	levelProbData
JFreeChart	graphLvlProbJFChart
JPanel	graphLvlProbJFChartChartPanel
JPanel	graphLvlProbJFChartCtrlPanel
JPanel	graphLvlProbSpinnerPane
Double	minLevelProbPlot = 0.0
Double	maxLevelProbPlot = 5.0
String	keyPar11 = "GA-LevelGrowthProbScheme"
JPanel	linePar11
JLabel	lblPar11
JComboBox< ProbabilityFuncitonShape >	cmbPar11
String	keyPar12 = "GA-LevelGrowthMultiplier"
JPanel	linePar12
JLabel	lblPar12
JSpinner	spnPar12
String	keyPar13 = "GA-LevelGrowthSigmaSteepness"
JPanel	linePar13
JLabel	lblPar13
JSpinner	spnPar13
String	keyPar14 = "GA-LevelGrowthSigmaMiddle"
JPanel	linePar14
JLabel	lblPar14
JSpinner	spnPar14
JPanel	localBlockLvlProb3
JPanel	localBlockLvlProb4
JPanel	localBlockLvlProbGraph
JPanel	localBlockLvlProbAll
DefaultXYDataset	crowdProbData
JFreeChart	graphCrowdProbJFChart
JPanel	graphCrowdProbJFChartChartPanel
JPanel	graphCrowdProbJFChartCtrlPanel
JPanel	graphCrowdProbSpinnerPane
Double	minLevelCrowdProbPlot = 0.0
Double	maxLevelCrowdProbPlot = 6.0
JPanel	localBlockCrowd3
JPanel	localBlockCrowd4
JPanel	localBlockCrowdGraph
String	keyParCrowd1 = "GA-CrowdProbScheme"
JPanel	lineParCrowd1
JLabel	lblParCrowd1
JComboBox< ProbabilityFuncitonShape >	cmbParCrowd1
String	keyParCrowd2 = "GA-CrowdMultiplier"
JPanel	lineParCrowd2
JLabel	lblParCrowd2
JSpinner	spnParCrowd2
String	keyParCrowd3 = "GA-CrowdSigmaSteepness"
JPanel	lineParCrowd3
JLabel	lblParCrowd3
JSpinner	spnParCrowd3
String	keyParCrowd4 = "GA-CrowdSigmaMiddle"
JPanel	lineParCrowd4
JLabel	lblParCrowd4
JSpinner	spnParCrowd4
String	keyPar15 = "GA-XOverSelectionMode"
JPanel	linePar15
JLabel	lblPar15
JComboBox< String >	cmbPar15
String	keyPar16 = "GA-CrossoverWeight"
JPanel	linePar16
JLabel	lblPar16
JTextField	txtPar16
String	keyPar17 = "GA-MutationWeight"
JPanel	linePar17
JLabel	lblPar17
JTextField	txtPar17
String	keyParMSM = "GA-MultiSiteMutationWeights"
JPanel	lineParMSM
JLabel	lblParMSM
JTextField	txtParMSM
String	keyParWC = "GA-ConstructionWeight"
JPanel	lineParWC
JLabel	lblParWC
JTextField	txtParWC
String	keyPar18 = "GA-SymmetryProbability"
JPanel	linePar18
JLabel	lblPar18
JTextField	txtPar18
String	keyPar19 = "GA-ReplacementStrategy"
JPanel	linePar19
JLabel	lblPar19
JComboBox< String >	cmbPar19
String	keyPar20 = "GA-InitPoplnFile"
JPanel	linePar20
JLabel	lblPar20
JTextField	txtPar20
JButton	btnPar20
String	keyPar21 = "GA-UIDFileIn"
JPanel	linePar21
JLabel	lblPar21
JTextField	txtPar21
JButton	btnPar21
String	keyPar22 = "GA-UIDFileOut"
JPanel	linePar22
JLabel	lblPar22
JTextField	txtPar22
JButton	btnPar22
String	keyPar24 = "GA-NumParallelTasks"
JPanel	linePar24
JLabel	lblPar24
JTextField	txtPar24
String	keyPar25 = "GA-Parallelization"
JPanel	linePar25
JLabel	lblPar25
JComboBox< String >	cmbPar25
String	keyRingTmplsFrags = "GA-KeepNewRingSystemVertexes"
JPanel	lineRingTmplsFrags
JRadioButton	rdbRingTmplsFrags
String	keyRingTmplsScaff = "GA-KeepNewRingSystemScaffolds"
JPanel	lineRingTmplsScaff
JRadioButton	rdbRingTmplsScaff
String	keyRingSysTmplTrhld = "GA-KeepNewRingSystemFitnessTrsh"
JPanel	lineRingSysTmpl
JLabel	lblRingSysTmpl
JSpinner	spnRingSysTmpl
String	NL = System.getProperty("line.separator")
Package Attributes inherited from denoptim.gui.ParametersForm
final Dimension	fileLabelSize = new Dimension(250,28)
	Default sizes for file pathname labels. More...
final int	preferredHeight
	Default text field height. More...
final Dimension	fileFieldSize = new Dimension(350,preferredHeight)
	Default sizes for file pathname fields. More...
final Dimension	strFieldSize = new Dimension(75,preferredHeight)
	Default sizes for short pathname fields (i.e., string or number) More...

Private Member Functions
void	updateSubsProbDataset ()
void	createLvlProbDataset ()
void	createLvlProbGraph ()
void	createLvlProbChart ()
void	updatemolSizeProbDataset ()
void	createMolSizeProbDataset ()
void	createMolSzProbGraph ()
void	createMolSzProbChart ()
void	updateCrowdProbDataset ()
void	createCrowdProbDataset ()
void	createCrowdProbGraph ()
void	createCrowdProbChart ()

Private Attributes
Map< String, Object >	mapKeyFieldToValueField
	Map connecting the parameter keyword and the field containing the parameter value. More...

Static Private Attributes
static final long	serialVersionUID = 5067352357196631445L
	Version. More...

Additional Inherited Members
Protected Member Functions inherited from denoptim.gui.ParametersForm
String	getStringIfNotEmpty (String key, JTextField field, String prefix, String suffix)
	Produced the KEY:VALUE string for a general text field. More...
String	getStringIfNotEmpty (String key, JEditorPane field, boolean multipleLines)
	Produced the KEY:VALUE string for a general text editor pane The text can include numbers, characters, or both. More...
String	getStringIfNotEmpty (String key, JTextField field)
	Produced the KEY:VALUE string for a general text field. More...
String	getStringForKVLine (String key, JSpinner spinner)
	Produced the KEY:VALUE string for a general spinner. More...
String	getStringIfSelected (String key, JRadioButton btn)
	Produced the KEY:VALUE string for a on/off button. More...
String	getStringFromTable (String key, JTable tab)
	Produced an overall string including one or more KEY:VALUE strings taken from a table. More...
String	getStringFromTable (String key, JTable tab, boolean skipHeader)
	Produced an overall string including one or more KEY:VALUE strings taken from a table. More...
String	getStringFromTable (String key, JTable tab, int[] fields, boolean skipHeader)
	Produced an overall string including one or more KEY:VALUE strings taken from a table. More...
String	getStringFromTable (String key, JTable tab, int[] fields, String sep, boolean skipHeader)
	Produced an overall string including one or more KEY:VALUE strings taken from a table. More...
void	importParametersFromDenoptimParamsFile (String fileName, String keyRoot) throws Exception
	Reads in the parameters from a text file collecting DENOPTIM parameters in the form of KEY=VALUE lines. More...
void	preliminatyTasksUponImportingParams ()
	Overwritten by subclasses. More...
void	adaptVisibility ()
	Overwritten by subclasses. More...
void	importParameterFromLine (String line) throws Exception
void	addToUnformattedTxt (String key, String value)
JPanel	getPanelForUnformattedInput ()
String	getTextForUnformattedSettings ()
void	clearUnformattedTxtArea ()
Protected Attributes inherited from denoptim.gui.ParametersForm
boolean	unsavedChanges = false
	Flag notifying that some data was not saved. More...
FieldListener	fieldListener
	Listener for changes in parameters of this form. More...
RdbFieldChange	rdbFieldChange
	Listener for changes in radio button-bound parameters. More...
TabFieldChange	tabFieldChange
	Listener for changes in table-bound parameters. More...
CmbFieldChange	cmbFieldChange
	Listener for changes in combo box-bound parameters. More...
Map< String, Boolean >	checkedFlags = new HashMap<String,Boolean>()
	Map of keyword to search for when reading a parameters file. More...
JTextArea	txtUnformattedInput = new JTextArea(5,20)
	Storage of unformatted text for input files. More...
boolean	foundCLIOnlyContent = false
	Flag recording we have imported text containing a line that is not interpreted as a GUI-controllable parameter. More...

Detailed Description

Form collecting input parameters for a genetic algorithm experiment.

Definition at line 73 of file GAParametersForm.java.

Constructor & Destructor Documentation

GAParametersForm()

denoptim.gui.GAParametersForm.GAParametersForm

(

Dimension

d

)

Definition at line 358 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.advOptsBlock, denoptim.gui.GAParametersForm.bgGrowthMode, denoptim.gui.GAParametersForm.block, denoptim.gui.GAParametersForm.btnFrgMols, denoptim.gui.GAParametersForm.btnGASource, denoptim.gui.GAParametersForm.btnLoadGASource, denoptim.gui.GAParametersForm.btnMolToGraph, denoptim.gui.GAParametersForm.btnPar20, denoptim.gui.GAParametersForm.btnPar21, denoptim.gui.GAParametersForm.btnPar22, denoptim.gui.ParametersForm.cmbFieldChange, denoptim.gui.GAParametersForm.cmbPar11, denoptim.gui.GAParametersForm.cmbPar15, denoptim.gui.GAParametersForm.cmbPar19, denoptim.gui.GAParametersForm.cmbPar2, denoptim.gui.GAParametersForm.cmbPar25, denoptim.gui.GAParametersForm.cmbParCrowd1, denoptim.gui.GAParametersForm.cmbParMolSz1, denoptim.gui.GAParametersForm.createCrowdProbGraph(), denoptim.gui.GAParametersForm.createLvlProbGraph(), denoptim.gui.GAParametersForm.createMolSzProbGraph(), denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.EXP_DIFF, denoptim.gui.ParametersForm.fieldListener, denoptim.gui.ParametersForm.fileFieldSize, denoptim.gui.ParametersForm.fileLabelSize, denoptim.gui.GAParametersForm.graphCrowdProbJFChart, denoptim.gui.GAParametersForm.graphCrowdProbJFChartChartPanel, denoptim.gui.GAParametersForm.graphCrowdProbJFChartCtrlPanel, denoptim.gui.GAParametersForm.graphCrowdProbSpinnerPane, denoptim.gui.GAParametersForm.graphLvlProbJFChart, denoptim.gui.GAParametersForm.graphLvlProbJFChartChartPanel, denoptim.gui.GAParametersForm.graphLvlProbJFChartCtrlPanel, denoptim.gui.GAParametersForm.graphLvlProbSpinnerPane, denoptim.gui.GAParametersForm.graphMolSzProbJFChart, denoptim.gui.GAParametersForm.graphMolSzProbJFChartChartPanel, denoptim.gui.GAParametersForm.graphMolSzProbJFChartCtrlPanel, denoptim.gui.GAParametersForm.graphMolSzProbSpinnerPane, denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.keyAddH, denoptim.gui.GAParametersForm.keyFrgMols, denoptim.gui.GAParametersForm.keyMolToGraph, denoptim.gui.GAParametersForm.keyPar1, denoptim.gui.GAParametersForm.keyPar10, denoptim.gui.GAParametersForm.keyPar11, denoptim.gui.GAParametersForm.keyPar12, denoptim.gui.GAParametersForm.keyPar13, denoptim.gui.GAParametersForm.keyPar14, denoptim.gui.GAParametersForm.keyPar15, denoptim.gui.GAParametersForm.keyPar16, denoptim.gui.GAParametersForm.keyPar17, denoptim.gui.GAParametersForm.keyPar18, denoptim.gui.GAParametersForm.keyPar19, denoptim.gui.GAParametersForm.keyPar2, denoptim.gui.GAParametersForm.keyPar20, denoptim.gui.GAParametersForm.keyPar21, denoptim.gui.GAParametersForm.keyPar22, denoptim.gui.GAParametersForm.keyPar24, denoptim.gui.GAParametersForm.keyPar25, denoptim.gui.GAParametersForm.keyPar3, denoptim.gui.GAParametersForm.keyPar5, denoptim.gui.GAParametersForm.keyPar6, denoptim.gui.GAParametersForm.keyPar7, denoptim.gui.GAParametersForm.keyPar8, denoptim.gui.GAParametersForm.keyPar9, denoptim.gui.GAParametersForm.keyParCrowd1, denoptim.gui.GAParametersForm.keyParCrowd2, denoptim.gui.GAParametersForm.keyParCrowd3, denoptim.gui.GAParametersForm.keyParCrowd4, denoptim.gui.GAParametersForm.keyParMolSz1, denoptim.gui.GAParametersForm.keyParMolSz2, denoptim.gui.GAParametersForm.keyParMolSz3, denoptim.gui.GAParametersForm.keyParMolSz4, denoptim.gui.GAParametersForm.keyParMSM, denoptim.gui.GAParametersForm.keyParWC, denoptim.gui.GAParametersForm.keyRingSysTmplTrhld, denoptim.gui.GAParametersForm.keyRingTmplsFrags, denoptim.gui.GAParametersForm.keyRingTmplsScaff, denoptim.gui.GAParametersForm.lblFrgMols, denoptim.gui.GAParametersForm.lblGASource, denoptim.gui.GAParametersForm.lblGrowthPropMode, denoptim.gui.GAParametersForm.lblMolToGraph, denoptim.gui.GAParametersForm.lblPar1, denoptim.gui.GAParametersForm.lblPar10, denoptim.gui.GAParametersForm.lblPar11, denoptim.gui.GAParametersForm.lblPar12, denoptim.gui.GAParametersForm.lblPar13, denoptim.gui.GAParametersForm.lblPar14, denoptim.gui.GAParametersForm.lblPar15, denoptim.gui.GAParametersForm.lblPar16, denoptim.gui.GAParametersForm.lblPar17, denoptim.gui.GAParametersForm.lblPar18, denoptim.gui.GAParametersForm.lblPar19, denoptim.gui.GAParametersForm.lblPar2, denoptim.gui.GAParametersForm.lblPar20, denoptim.gui.GAParametersForm.lblPar21, denoptim.gui.GAParametersForm.lblPar22, denoptim.gui.GAParametersForm.lblPar24, denoptim.gui.GAParametersForm.lblPar25, denoptim.gui.GAParametersForm.lblPar3, denoptim.gui.GAParametersForm.lblPar6, denoptim.gui.GAParametersForm.lblPar7, denoptim.gui.GAParametersForm.lblPar8, denoptim.gui.GAParametersForm.lblPar9, denoptim.gui.GAParametersForm.lblParCrowd1, denoptim.gui.GAParametersForm.lblParCrowd2, denoptim.gui.GAParametersForm.lblParCrowd3, denoptim.gui.GAParametersForm.lblParCrowd4, denoptim.gui.GAParametersForm.lblParMolSz1, denoptim.gui.GAParametersForm.lblParMolSz2, denoptim.gui.GAParametersForm.lblParMolSz3, denoptim.gui.GAParametersForm.lblParMolSz4, denoptim.gui.GAParametersForm.lblParMSM, denoptim.gui.GAParametersForm.lblParWC, denoptim.gui.GAParametersForm.lblRingSysTmpl, denoptim.gui.GAParametersForm.lineAddH, denoptim.gui.GAParametersForm.lineFrgMols, denoptim.gui.GAParametersForm.lineGASource, denoptim.gui.GAParametersForm.lineGrowthPropMode, denoptim.gui.GAParametersForm.lineMolToGraph, denoptim.gui.GAParametersForm.linePar1, denoptim.gui.GAParametersForm.linePar10, denoptim.gui.GAParametersForm.linePar11, denoptim.gui.GAParametersForm.linePar12, denoptim.gui.GAParametersForm.linePar13, denoptim.gui.GAParametersForm.linePar14, denoptim.gui.GAParametersForm.linePar15, denoptim.gui.GAParametersForm.linePar16, denoptim.gui.GAParametersForm.linePar17, denoptim.gui.GAParametersForm.linePar18, denoptim.gui.GAParametersForm.linePar19, denoptim.gui.GAParametersForm.linePar2, denoptim.gui.GAParametersForm.linePar20, denoptim.gui.GAParametersForm.linePar21, denoptim.gui.GAParametersForm.linePar22, denoptim.gui.GAParametersForm.linePar24, denoptim.gui.GAParametersForm.linePar25, denoptim.gui.GAParametersForm.linePar3, denoptim.gui.GAParametersForm.linePar5, denoptim.gui.GAParametersForm.linePar6, denoptim.gui.GAParametersForm.linePar7, denoptim.gui.GAParametersForm.linePar8, denoptim.gui.GAParametersForm.linePar9, denoptim.gui.GAParametersForm.lineParCrowd1, denoptim.gui.GAParametersForm.lineParCrowd2, denoptim.gui.GAParametersForm.lineParCrowd3, denoptim.gui.GAParametersForm.lineParCrowd4, denoptim.gui.GAParametersForm.lineParMolSz1, denoptim.gui.GAParametersForm.lineParMolSz2, denoptim.gui.GAParametersForm.lineParMolSz3, denoptim.gui.GAParametersForm.lineParMolSz4, denoptim.gui.GAParametersForm.lineParMSM, denoptim.gui.GAParametersForm.lineParWC, denoptim.gui.GAParametersForm.lineRingSysTmpl, denoptim.gui.GAParametersForm.lineRingTmplsFrags, denoptim.gui.GAParametersForm.lineRingTmplsScaff, denoptim.gui.GAParametersForm.lineSrcOrNew, denoptim.gui.GAParametersForm.localBlock1, denoptim.gui.GAParametersForm.localBlock2, denoptim.gui.GAParametersForm.localBlockCrowd3, denoptim.gui.GAParametersForm.localBlockCrowd4, denoptim.gui.GAParametersForm.localBlockCrowdGraph, denoptim.gui.GAParametersForm.localBlockLvlProb3, denoptim.gui.GAParametersForm.localBlockLvlProb4, denoptim.gui.GAParametersForm.localBlockLvlProbAll, denoptim.gui.GAParametersForm.localBlockLvlProbGraph, denoptim.gui.GAParametersForm.localBlockMolSz3, denoptim.gui.GAParametersForm.localBlockMolSz4, denoptim.gui.GAParametersForm.localBlockMolSzAll, denoptim.gui.GAParametersForm.localBlockMolSzGraph, denoptim.gui.GAParametersForm.mapKeyFieldToValueField, denoptim.gui.GAParametersForm.maxLevelCrowdProbPlot, denoptim.gui.GAParametersForm.maxLevelProbPlot, denoptim.gui.GAParametersForm.maxMolSizeProbPlot, denoptim.gui.GAParametersForm.minLevelCrowdProbPlot, denoptim.gui.GAParametersForm.minLevelProbPlot, denoptim.gui.GAParametersForm.minMolSizeProbPlot, denoptim.gui.GUIFileOpener.pickFileForTxtField(), denoptim.gui.ParametersForm.preferredHeight, denoptim.gui.GAParametersForm.rbtLevelGrowth, denoptim.gui.GAParametersForm.rbtMolSzGrowth, denoptim.gui.GAParametersForm.rdbAddH, denoptim.gui.ParametersForm.rdbFieldChange, denoptim.gui.GAParametersForm.rdbPar5, denoptim.gui.GAParametersForm.rdbRingTmplsFrags, denoptim.gui.GAParametersForm.rdbRingTmplsScaff, denoptim.gui.GAParametersForm.rdbSrcOrNew, denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.SIGMA, denoptim.gui.GAParametersForm.spnPar12, denoptim.gui.GAParametersForm.spnPar13, denoptim.gui.GAParametersForm.spnPar14, denoptim.gui.GAParametersForm.spnParCrowd2, denoptim.gui.GAParametersForm.spnParCrowd3, denoptim.gui.GAParametersForm.spnParCrowd4, denoptim.gui.GAParametersForm.spnParMolSz2, denoptim.gui.GAParametersForm.spnParMolSz3, denoptim.gui.GAParametersForm.spnParMolSz4, denoptim.gui.GAParametersForm.spnRingSysTmpl, denoptim.gui.ParametersForm.strFieldSize, denoptim.gui.GAParametersForm.txtFrgMols, denoptim.gui.GAParametersForm.txtGASource, denoptim.gui.GAParametersForm.txtMolToGraph, denoptim.gui.GAParametersForm.txtPar1, denoptim.gui.GAParametersForm.txtPar10, denoptim.gui.GAParametersForm.txtPar16, denoptim.gui.GAParametersForm.txtPar17, denoptim.gui.GAParametersForm.txtPar18, denoptim.gui.GAParametersForm.txtPar20, denoptim.gui.GAParametersForm.txtPar21, denoptim.gui.GAParametersForm.txtPar22, denoptim.gui.GAParametersForm.txtPar24, denoptim.gui.GAParametersForm.txtPar3, denoptim.gui.GAParametersForm.txtPar6, denoptim.gui.GAParametersForm.txtPar7, denoptim.gui.GAParametersForm.txtPar8, denoptim.gui.GAParametersForm.txtPar9, denoptim.gui.GAParametersForm.txtParMSM, denoptim.gui.GAParametersForm.txtParWC, denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.UNRESTRICTED, denoptim.gui.GAParametersForm.updateCrowdProbDataset(), denoptim.gui.GAParametersForm.updatemolSizeProbDataset(), and denoptim.gui.GAParametersForm.updateSubsProbDataset().

Here is the call graph for this function:

Member Function Documentation

createCrowdProbChart()

void denoptim.gui.GAParametersForm.createCrowdProbChart ( )

private

Definition at line 1854 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.crowdProbData, denoptim.gui.GAParametersForm.graphCrowdProbJFChart, denoptim.gui.GAParametersForm.maxLevelCrowdProbPlot, and denoptim.gui.GAParametersForm.minLevelCrowdProbPlot.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbGraph().

Here is the caller graph for this function:

createCrowdProbDataset()

void denoptim.gui.GAParametersForm.createCrowdProbDataset ( )

private

Definition at line 1800 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.cmbParCrowd1, denoptim.programs.denovo.GAParameters.convertProbabilityScheme(), denoptim.gui.GAParametersForm.crowdProbData, denoptim.ga.EAUtils.getCrowdingProbabilityForCrowdedness(), denoptim.gui.GAParametersForm.spnParCrowd2, denoptim.gui.GAParametersForm.spnParCrowd3, and denoptim.gui.GAParametersForm.spnParCrowd4.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbGraph(), and denoptim.gui.GAParametersForm.updateCrowdProbDataset().

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createCrowdProbGraph()

void denoptim.gui.GAParametersForm.createCrowdProbGraph ( )

private

Definition at line 1844 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createCrowdProbChart(), denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.graphCrowdProbJFChart, and denoptim.gui.GAParametersForm.graphCrowdProbJFChartChartPanel.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

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createLvlProbChart()

void denoptim.gui.GAParametersForm.createLvlProbChart ( )

private

Definition at line 1654 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.graphLvlProbJFChart, denoptim.gui.GAParametersForm.levelProbData, denoptim.gui.GAParametersForm.maxLevelProbPlot, and denoptim.gui.GAParametersForm.minLevelProbPlot.

Referenced by denoptim.gui.GAParametersForm.createLvlProbGraph().

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createLvlProbDataset()

void denoptim.gui.GAParametersForm.createLvlProbDataset ( )

private

Definition at line 1600 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.cmbPar11, denoptim.programs.denovo.GAParameters.convertProbabilityScheme(), denoptim.ga.EAUtils.getGrowthProbabilityAtLevel(), denoptim.gui.GAParametersForm.levelProbData, denoptim.gui.GAParametersForm.spnPar12, denoptim.gui.GAParametersForm.spnPar13, and denoptim.gui.GAParametersForm.spnPar14.

Referenced by denoptim.gui.GAParametersForm.createLvlProbGraph(), and denoptim.gui.GAParametersForm.updateSubsProbDataset().

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createLvlProbGraph()

void denoptim.gui.GAParametersForm.createLvlProbGraph ( )

private

Definition at line 1644 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createLvlProbChart(), denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.graphLvlProbJFChart, and denoptim.gui.GAParametersForm.graphLvlProbJFChartChartPanel.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

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createMolSizeProbDataset()

void denoptim.gui.GAParametersForm.createMolSizeProbDataset ( )

private

Definition at line 1700 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.cmbParMolSz1, denoptim.programs.denovo.GAParameters.convertProbabilityScheme(), denoptim.ga.EAUtils.getProbability(), denoptim.gui.GAParametersForm.molSizeProbData, denoptim.gui.GAParametersForm.spnParMolSz2, denoptim.gui.GAParametersForm.spnParMolSz3, and denoptim.gui.GAParametersForm.spnParMolSz4.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbGraph(), and denoptim.gui.GAParametersForm.updatemolSizeProbDataset().

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createMolSzProbChart()

void denoptim.gui.GAParametersForm.createMolSzProbChart ( )

private

Definition at line 1754 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.graphMolSzProbJFChart, denoptim.gui.GAParametersForm.maxMolSizeProbPlot, denoptim.gui.GAParametersForm.minMolSizeProbPlot, and denoptim.gui.GAParametersForm.molSizeProbData.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbGraph().

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createMolSzProbGraph()

void denoptim.gui.GAParametersForm.createMolSzProbGraph ( )

private

Definition at line 1744 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.createMolSzProbChart(), denoptim.gui.GAParametersForm.graphMolSzProbJFChart, and denoptim.gui.GAParametersForm.graphMolSzProbJFChartChartPanel.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

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importParametersFromDenoptimParamsFile()

void denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile

(

String

fileName

)

throws Exception

Imports parameters from a properly formatted parameters file.

The file is a text file with lines containing KEY=VALUE pairs. The visibility of the blocks of content is set accordingly to the parameters.

Parameters

fileName

the pathname of the file to read

Exceptions

Exception

Reimplemented from denoptim.gui.ParametersForm.

Definition at line 1902 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.advOptsBlock, denoptim.gui.ParametersForm.checkedFlags, denoptim.gui.ParametersForm.clearUnformattedTxtArea(), denoptim.gui.GAParametersForm.cmbPar11, denoptim.gui.GAParametersForm.cmbParCrowd1, denoptim.gui.GAParametersForm.cmbParMolSz1, denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.keyPar11, denoptim.gui.GAParametersForm.localBlock1, denoptim.gui.GAParametersForm.localBlock2, denoptim.gui.GAParametersForm.localBlockCrowd3, denoptim.gui.GAParametersForm.localBlockCrowd4, denoptim.gui.GAParametersForm.localBlockCrowdGraph, denoptim.gui.GAParametersForm.localBlockLvlProb3, denoptim.gui.GAParametersForm.localBlockLvlProb4, denoptim.gui.GAParametersForm.localBlockLvlProbAll, denoptim.gui.GAParametersForm.localBlockMolSz3, denoptim.gui.GAParametersForm.localBlockMolSz4, denoptim.gui.GAParametersForm.localBlockMolSzAll, denoptim.gui.GAParametersForm.rbtLevelGrowth, denoptim.gui.GAParametersForm.rbtMolSzGrowth, denoptim.gui.GAParametersForm.rdbSrcOrNew, denoptim.gui.ParametersForm.showUnknownKeyWarning(), and denoptim.gui.GAParametersForm.updateCrowdProbDataset().

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.GAParametersForm.putParametersToString().

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importSingleParameter()

void denoptim.gui.GAParametersForm.importSingleParameter	(	String	key,
		String	value
	)		throws Exception

Reimplemented from denoptim.gui.ParametersForm.

Definition at line 2019 of file GAParametersForm.java.

References denoptim.gui.ParametersForm.addToUnformattedTxt(), denoptim.gui.GAParametersForm.cmbPar11, denoptim.gui.GAParametersForm.cmbParCrowd1, denoptim.gui.GAParametersForm.cmbParMolSz1, and denoptim.gui.GAParametersForm.mapKeyFieldToValueField.

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putParametersToString()

void denoptim.gui.GAParametersForm.putParametersToString

(

StringBuilder

sb

)

throws Exception

Reimplemented from denoptim.gui.ParametersForm.

Definition at line 2083 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.cmbPar11, denoptim.gui.GAParametersForm.cmbPar15, denoptim.gui.GAParametersForm.cmbPar19, denoptim.gui.GAParametersForm.cmbPar2, denoptim.gui.GAParametersForm.cmbPar25, denoptim.gui.GAParametersForm.cmbParCrowd1, denoptim.gui.GAParametersForm.cmbParMolSz1, denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.EXP_DIFF, denoptim.gui.ParametersForm.getStringForKVLine(), denoptim.gui.ParametersForm.getStringIfNotEmpty(), denoptim.gui.ParametersForm.getStringIfSelected(), denoptim.gui.ParametersForm.getTextForUnformattedSettings(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.keyAddH, denoptim.gui.GAParametersForm.keyFrgMols, denoptim.gui.GAParametersForm.keyMolToGraph, denoptim.gui.GAParametersForm.keyPar1, denoptim.gui.GAParametersForm.keyPar10, denoptim.gui.GAParametersForm.keyPar11, denoptim.gui.GAParametersForm.keyPar12, denoptim.gui.GAParametersForm.keyPar13, denoptim.gui.GAParametersForm.keyPar14, denoptim.gui.GAParametersForm.keyPar15, denoptim.gui.GAParametersForm.keyPar16, denoptim.gui.GAParametersForm.keyPar17, denoptim.gui.GAParametersForm.keyPar18, denoptim.gui.GAParametersForm.keyPar19, denoptim.gui.GAParametersForm.keyPar2, denoptim.gui.GAParametersForm.keyPar20, denoptim.gui.GAParametersForm.keyPar21, denoptim.gui.GAParametersForm.keyPar22, denoptim.gui.GAParametersForm.keyPar24, denoptim.gui.GAParametersForm.keyPar25, denoptim.gui.GAParametersForm.keyPar3, denoptim.gui.GAParametersForm.keyPar5, denoptim.gui.GAParametersForm.keyPar6, denoptim.gui.GAParametersForm.keyPar7, denoptim.gui.GAParametersForm.keyPar8, denoptim.gui.GAParametersForm.keyPar9, denoptim.gui.GAParametersForm.keyParCrowd1, denoptim.gui.GAParametersForm.keyParCrowd2, denoptim.gui.GAParametersForm.keyParCrowd3, denoptim.gui.GAParametersForm.keyParCrowd4, denoptim.gui.GAParametersForm.keyParMolSz1, denoptim.gui.GAParametersForm.keyParMolSz2, denoptim.gui.GAParametersForm.keyParMolSz3, denoptim.gui.GAParametersForm.keyParMolSz4, denoptim.gui.GAParametersForm.keyParMSM, denoptim.gui.GAParametersForm.keyParWC, denoptim.gui.GAParametersForm.keyRingSysTmplTrhld, denoptim.gui.GAParametersForm.keyRingTmplsFrags, denoptim.gui.GAParametersForm.keyRingTmplsScaff, denoptim.gui.GAParametersForm.NL, denoptim.gui.GAParametersForm.rbtLevelGrowth, denoptim.gui.GAParametersForm.rbtMolSzGrowth, denoptim.gui.GAParametersForm.rdbAddH, denoptim.gui.GAParametersForm.rdbPar5, denoptim.gui.GAParametersForm.rdbRingTmplsFrags, denoptim.gui.GAParametersForm.rdbRingTmplsScaff, denoptim.gui.GAParametersForm.rdbSrcOrNew, denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.SIGMA, denoptim.gui.GAParametersForm.spnPar12, denoptim.gui.GAParametersForm.spnPar13, denoptim.gui.GAParametersForm.spnPar14, denoptim.gui.GAParametersForm.spnParCrowd2, denoptim.gui.GAParametersForm.spnParCrowd3, denoptim.gui.GAParametersForm.spnParCrowd4, denoptim.gui.GAParametersForm.spnParMolSz2, denoptim.gui.GAParametersForm.spnParMolSz3, denoptim.gui.GAParametersForm.spnParMolSz4, denoptim.gui.GAParametersForm.spnRingSysTmpl, denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.TANH, denoptim.gui.GAParametersForm.txtFrgMols, denoptim.gui.GAParametersForm.txtGASource, denoptim.gui.GAParametersForm.txtMolToGraph, denoptim.gui.GAParametersForm.txtPar1, denoptim.gui.GAParametersForm.txtPar10, denoptim.gui.GAParametersForm.txtPar16, denoptim.gui.GAParametersForm.txtPar17, denoptim.gui.GAParametersForm.txtPar18, denoptim.gui.GAParametersForm.txtPar20, denoptim.gui.GAParametersForm.txtPar21, denoptim.gui.GAParametersForm.txtPar22, denoptim.gui.GAParametersForm.txtPar24, denoptim.gui.GAParametersForm.txtPar3, denoptim.gui.GAParametersForm.txtPar6, denoptim.gui.GAParametersForm.txtPar7, denoptim.gui.GAParametersForm.txtPar8, denoptim.gui.GAParametersForm.txtPar9, denoptim.gui.GAParametersForm.txtParMSM, denoptim.gui.GAParametersForm.txtParWC, and denoptim.gui.GAParametersForm.ProbabilityFuncitonShape.UNRESTRICTED.

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updateCrowdProbDataset()

void denoptim.gui.GAParametersForm.updateCrowdProbDataset ( )

private

Definition at line 1792 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.crowdProbData, and denoptim.gui.GAParametersForm.graphCrowdProbJFChart.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

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updatemolSizeProbDataset()

void denoptim.gui.GAParametersForm.updatemolSizeProbDataset ( )

private

Definition at line 1692 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.graphMolSzProbJFChart, and denoptim.gui.GAParametersForm.molSizeProbData.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

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updateSubsProbDataset()

void denoptim.gui.GAParametersForm.updateSubsProbDataset ( )

private

Definition at line 1592 of file GAParametersForm.java.

References denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.graphLvlProbJFChart, and denoptim.gui.GAParametersForm.levelProbData.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

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Member Data Documentation

advOptsBlock

JPanel denoptim.gui.GAParametersForm.advOptsBlock

package

Definition at line 95 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

bgGrowthMode

ButtonGroup denoptim.gui.GAParametersForm.bgGrowthMode

package

Definition at line 169 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

block

JPanel denoptim.gui.GAParametersForm.block

package

Definition at line 92 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnFrgMols

JButton denoptim.gui.GAParametersForm.btnFrgMols

package

Definition at line 159 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnGASource

JButton denoptim.gui.GAParametersForm.btnGASource

package

Definition at line 103 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnLoadGASource

JButton denoptim.gui.GAParametersForm.btnLoadGASource

package

Definition at line 104 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnMolToGraph

JButton denoptim.gui.GAParametersForm.btnMolToGraph

package

Definition at line 153 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnPar20

JButton denoptim.gui.GAParametersForm.btnPar20

package

Definition at line 310 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnPar21

JButton denoptim.gui.GAParametersForm.btnPar21

package

Definition at line 316 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

btnPar22

JButton denoptim.gui.GAParametersForm.btnPar22

package

Definition at line 322 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

cmbPar11

JComboBox<ProbabilityFuncitonShape> denoptim.gui.GAParametersForm.cmbPar11

package

Definition at line 217 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.importSingleParameter(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbPar15

JComboBox<String> denoptim.gui.GAParametersForm.cmbPar15

package

Definition at line 274 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbPar19

JComboBox<String> denoptim.gui.GAParametersForm.cmbPar19

package

Definition at line 304 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbPar2

JComboBox<String> denoptim.gui.GAParametersForm.cmbPar2

package

Definition at line 119 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbPar25

JComboBox<String> denoptim.gui.GAParametersForm.cmbPar25

package

Definition at line 332 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbParCrowd1

JComboBox<ProbabilityFuncitonShape> denoptim.gui.GAParametersForm.cmbParCrowd1

package

Definition at line 254 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.importSingleParameter(), and denoptim.gui.GAParametersForm.putParametersToString().

cmbParMolSz1

JComboBox<ProbabilityFuncitonShape> denoptim.gui.GAParametersForm.cmbParMolSz1

package

Definition at line 184 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), denoptim.gui.GAParametersForm.importSingleParameter(), and denoptim.gui.GAParametersForm.putParametersToString().

crowdProbData

DefaultXYDataset denoptim.gui.GAParametersForm.crowdProbData

package

Definition at line 239 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbChart(), denoptim.gui.GAParametersForm.createCrowdProbDataset(), and denoptim.gui.GAParametersForm.updateCrowdProbDataset().

gaFormUID

AtomicInteger denoptim.gui.GAParametersForm.gaFormUID = new AtomicInteger(1)

static

Unique identified for instances of this form.

Definition at line 84 of file GAParametersForm.java.

graphCrowdProbJFChart

JFreeChart denoptim.gui.GAParametersForm.graphCrowdProbJFChart

package

Definition at line 240 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbChart(), denoptim.gui.GAParametersForm.createCrowdProbGraph(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.updateCrowdProbDataset().

graphCrowdProbJFChartChartPanel

JPanel denoptim.gui.GAParametersForm.graphCrowdProbJFChartChartPanel

package

Definition at line 241 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbGraph(), and denoptim.gui.GAParametersForm.GAParametersForm().

graphCrowdProbJFChartCtrlPanel

JPanel denoptim.gui.GAParametersForm.graphCrowdProbJFChartCtrlPanel

package

Definition at line 242 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

graphCrowdProbSpinnerPane

JPanel denoptim.gui.GAParametersForm.graphCrowdProbSpinnerPane

package

Definition at line 243 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

graphLvlProbJFChart

JFreeChart denoptim.gui.GAParametersForm.graphLvlProbJFChart

package

Definition at line 207 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbChart(), denoptim.gui.GAParametersForm.createLvlProbGraph(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.updateSubsProbDataset().

graphLvlProbJFChartChartPanel

JPanel denoptim.gui.GAParametersForm.graphLvlProbJFChartChartPanel

package

Definition at line 208 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbGraph(), and denoptim.gui.GAParametersForm.GAParametersForm().

graphLvlProbJFChartCtrlPanel

JPanel denoptim.gui.GAParametersForm.graphLvlProbJFChartCtrlPanel

package

Definition at line 209 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

graphLvlProbSpinnerPane

JPanel denoptim.gui.GAParametersForm.graphLvlProbSpinnerPane

package

Definition at line 210 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

graphMolSzProbJFChart

JFreeChart denoptim.gui.GAParametersForm.graphMolSzProbJFChart

package

Definition at line 174 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbChart(), denoptim.gui.GAParametersForm.createMolSzProbGraph(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.updatemolSizeProbDataset().

graphMolSzProbJFChartChartPanel

JPanel denoptim.gui.GAParametersForm.graphMolSzProbJFChartChartPanel

package

Definition at line 175 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbGraph(), and denoptim.gui.GAParametersForm.GAParametersForm().

graphMolSzProbJFChartCtrlPanel

JPanel denoptim.gui.GAParametersForm.graphMolSzProbJFChartCtrlPanel

package

Definition at line 176 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

graphMolSzProbSpinnerPane

JPanel denoptim.gui.GAParametersForm.graphMolSzProbSpinnerPane

package

Definition at line 177 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

keyAddH

String denoptim.gui.GAParametersForm.keyAddH = "FRG-AddExplicitHydrogen"

package

Definition at line 165 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyFrgMols

String denoptim.gui.GAParametersForm.keyFrgMols = "FRG-CuttingRulesFile"

package

Definition at line 160 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyMolToGraph

String denoptim.gui.GAParametersForm.keyMolToGraph = "GA-InitMolsToFragmentFile"

package

Definition at line 154 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar1

String denoptim.gui.GAParametersForm.keyPar1 = "GA-PrecisionLevel"

package

Definition at line 111 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar10

String denoptim.gui.GAParametersForm.keyPar10 = "GA-MaxTriesPerPopulation"

package

Definition at line 145 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar11

String denoptim.gui.GAParametersForm.keyPar11 = "GA-LevelGrowthProbScheme"

package

Definition at line 214 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar12

String denoptim.gui.GAParametersForm.keyPar12 = "GA-LevelGrowthMultiplier"

package

Definition at line 219 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar13

String denoptim.gui.GAParametersForm.keyPar13 = "GA-LevelGrowthSigmaSteepness"

package

Definition at line 224 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar14

String denoptim.gui.GAParametersForm.keyPar14 = "GA-LevelGrowthSigmaMiddle"

package

Definition at line 229 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar15

String denoptim.gui.GAParametersForm.keyPar15 = "GA-XOverSelectionMode"

package

Definition at line 271 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar16

String denoptim.gui.GAParametersForm.keyPar16 = "GA-CrossoverWeight"

package

Definition at line 276 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar17

String denoptim.gui.GAParametersForm.keyPar17 = "GA-MutationWeight"

package

Definition at line 281 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar18

String denoptim.gui.GAParametersForm.keyPar18 = "GA-SymmetryProbability"

package

Definition at line 296 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar19

String denoptim.gui.GAParametersForm.keyPar19 = "GA-ReplacementStrategy"

package

Definition at line 301 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar2

String denoptim.gui.GAParametersForm.keyPar2 = "GA-Verbosity"

package

Definition at line 116 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar20

String denoptim.gui.GAParametersForm.keyPar20 = "GA-InitPoplnFile"

package

Definition at line 306 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar21

String denoptim.gui.GAParametersForm.keyPar21 = "GA-UIDFileIn"

package

Definition at line 312 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar22

String denoptim.gui.GAParametersForm.keyPar22 = "GA-UIDFileOut"

package

Definition at line 318 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar24

String denoptim.gui.GAParametersForm.keyPar24 = "GA-NumParallelTasks"

package

Definition at line 324 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar25

String denoptim.gui.GAParametersForm.keyPar25 = "GA-Parallelization"

package

Definition at line 329 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar3

String denoptim.gui.GAParametersForm.keyPar3 = "GA-RandomSeed"

package

Definition at line 106 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar5

String denoptim.gui.GAParametersForm.keyPar5 = "GA-SortByIncreasingFitness"

package

Definition at line 121 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar6

String denoptim.gui.GAParametersForm.keyPar6 = "GA-PopulationSize"

package

Definition at line 125 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar7

String denoptim.gui.GAParametersForm.keyPar7 = "GA-NumChildren"

package

Definition at line 130 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar8

String denoptim.gui.GAParametersForm.keyPar8 = "GA-NumGenerations"

package

Definition at line 135 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyPar9

String denoptim.gui.GAParametersForm.keyPar9 = "GA-NumConvGen"

package

Definition at line 140 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParCrowd1

String denoptim.gui.GAParametersForm.keyParCrowd1 = "GA-CrowdProbScheme"

package

Definition at line 251 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParCrowd2

String denoptim.gui.GAParametersForm.keyParCrowd2 = "GA-CrowdMultiplier"

package

Definition at line 256 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParCrowd3

String denoptim.gui.GAParametersForm.keyParCrowd3 = "GA-CrowdSigmaSteepness"

package

Definition at line 261 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParCrowd4

String denoptim.gui.GAParametersForm.keyParCrowd4 = "GA-CrowdSigmaMiddle"

package

Definition at line 266 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParMolSz1

String denoptim.gui.GAParametersForm.keyParMolSz1 = "GA-MolGrowthProbScheme"

package

Definition at line 181 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParMolSz2

String denoptim.gui.GAParametersForm.keyParMolSz2 = "GA-MolGrowthMultiplier"

package

Definition at line 186 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParMolSz3

String denoptim.gui.GAParametersForm.keyParMolSz3 = "GA-MolGrowthSigmaSteepness"

package

Definition at line 191 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParMolSz4

String denoptim.gui.GAParametersForm.keyParMolSz4 = "GA-MolGrowthSigmaMiddle"

package

Definition at line 196 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParMSM

String denoptim.gui.GAParametersForm.keyParMSM = "GA-MultiSiteMutationWeights"

package

Definition at line 286 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyParWC

String denoptim.gui.GAParametersForm.keyParWC = "GA-ConstructionWeight"

package

Definition at line 291 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyRingSysTmplTrhld

String denoptim.gui.GAParametersForm.keyRingSysTmplTrhld = "GA-KeepNewRingSystemFitnessTrsh"

package

Definition at line 342 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyRingTmplsFrags

String denoptim.gui.GAParametersForm.keyRingTmplsFrags = "GA-KeepNewRingSystemVertexes"

package

Definition at line 334 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

keyRingTmplsScaff

String denoptim.gui.GAParametersForm.keyRingTmplsScaff = "GA-KeepNewRingSystemScaffolds"

package

Definition at line 338 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

lblAddH

JLabel denoptim.gui.GAParametersForm.lblAddH

package

Definition at line 163 of file GAParametersForm.java.

lblFrgMols

JLabel denoptim.gui.GAParametersForm.lblFrgMols

package

Definition at line 157 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblGASource

JLabel denoptim.gui.GAParametersForm.lblGASource

package

Definition at line 101 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblGrowthPropMode

JLabel denoptim.gui.GAParametersForm.lblGrowthPropMode

package

Definition at line 168 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblMolToGraph

JLabel denoptim.gui.GAParametersForm.lblMolToGraph

package

Definition at line 151 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar1

JLabel denoptim.gui.GAParametersForm.lblPar1

package

Definition at line 113 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar10

JLabel denoptim.gui.GAParametersForm.lblPar10

package

Definition at line 147 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar11

JLabel denoptim.gui.GAParametersForm.lblPar11

package

Definition at line 216 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar12

JLabel denoptim.gui.GAParametersForm.lblPar12

package

Definition at line 221 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar13

JLabel denoptim.gui.GAParametersForm.lblPar13

package

Definition at line 226 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar14

JLabel denoptim.gui.GAParametersForm.lblPar14

package

Definition at line 231 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar15

JLabel denoptim.gui.GAParametersForm.lblPar15

package

Definition at line 273 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar16

JLabel denoptim.gui.GAParametersForm.lblPar16

package

Definition at line 278 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar17

JLabel denoptim.gui.GAParametersForm.lblPar17

package

Definition at line 283 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar18

JLabel denoptim.gui.GAParametersForm.lblPar18

package

Definition at line 298 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar19

JLabel denoptim.gui.GAParametersForm.lblPar19

package

Definition at line 303 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar2

JLabel denoptim.gui.GAParametersForm.lblPar2

package

Definition at line 118 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar20

JLabel denoptim.gui.GAParametersForm.lblPar20

package

Definition at line 308 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar21

JLabel denoptim.gui.GAParametersForm.lblPar21

package

Definition at line 314 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar22

JLabel denoptim.gui.GAParametersForm.lblPar22

package

Definition at line 320 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar24

JLabel denoptim.gui.GAParametersForm.lblPar24

package

Definition at line 326 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar25

JLabel denoptim.gui.GAParametersForm.lblPar25

package

Definition at line 331 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar3

JLabel denoptim.gui.GAParametersForm.lblPar3

package

Definition at line 108 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar6

JLabel denoptim.gui.GAParametersForm.lblPar6

package

Definition at line 127 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar7

JLabel denoptim.gui.GAParametersForm.lblPar7

package

Definition at line 132 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar8

JLabel denoptim.gui.GAParametersForm.lblPar8

package

Definition at line 137 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblPar9

JLabel denoptim.gui.GAParametersForm.lblPar9

package

Definition at line 142 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParCrowd1

JLabel denoptim.gui.GAParametersForm.lblParCrowd1

package

Definition at line 253 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParCrowd2

JLabel denoptim.gui.GAParametersForm.lblParCrowd2

package

Definition at line 258 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParCrowd3

JLabel denoptim.gui.GAParametersForm.lblParCrowd3

package

Definition at line 263 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParCrowd4

JLabel denoptim.gui.GAParametersForm.lblParCrowd4

package

Definition at line 268 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParMolSz1

JLabel denoptim.gui.GAParametersForm.lblParMolSz1

package

Definition at line 183 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParMolSz2

JLabel denoptim.gui.GAParametersForm.lblParMolSz2

package

Definition at line 188 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParMolSz3

JLabel denoptim.gui.GAParametersForm.lblParMolSz3

package

Definition at line 193 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParMolSz4

JLabel denoptim.gui.GAParametersForm.lblParMolSz4

package

Definition at line 198 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParMSM

JLabel denoptim.gui.GAParametersForm.lblParMSM

package

Definition at line 288 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblParWC

JLabel denoptim.gui.GAParametersForm.lblParWC

package

Definition at line 293 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lblRingSysTmpl

JLabel denoptim.gui.GAParametersForm.lblRingSysTmpl

package

Definition at line 344 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

levelProbData

DefaultXYDataset denoptim.gui.GAParametersForm.levelProbData

package

Definition at line 206 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbChart(), denoptim.gui.GAParametersForm.createLvlProbDataset(), and denoptim.gui.GAParametersForm.updateSubsProbDataset().

lineAddH

JPanel denoptim.gui.GAParametersForm.lineAddH

package

Definition at line 162 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineFrgMols

JPanel denoptim.gui.GAParametersForm.lineFrgMols

package

Definition at line 156 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineGASource

JPanel denoptim.gui.GAParametersForm.lineGASource

package

Definition at line 100 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineGrowthPropMode

JPanel denoptim.gui.GAParametersForm.lineGrowthPropMode

package

Definition at line 167 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineMolToGraph

JPanel denoptim.gui.GAParametersForm.lineMolToGraph

package

Definition at line 150 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar1

JPanel denoptim.gui.GAParametersForm.linePar1

package

Definition at line 112 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar10

JPanel denoptim.gui.GAParametersForm.linePar10

package

Definition at line 146 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar11

JPanel denoptim.gui.GAParametersForm.linePar11

package

Definition at line 215 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar12

JPanel denoptim.gui.GAParametersForm.linePar12

package

Definition at line 220 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar13

JPanel denoptim.gui.GAParametersForm.linePar13

package

Definition at line 225 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar14

JPanel denoptim.gui.GAParametersForm.linePar14

package

Definition at line 230 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar15

JPanel denoptim.gui.GAParametersForm.linePar15

package

Definition at line 272 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar16

JPanel denoptim.gui.GAParametersForm.linePar16

package

Definition at line 277 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar17

JPanel denoptim.gui.GAParametersForm.linePar17

package

Definition at line 282 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar18

JPanel denoptim.gui.GAParametersForm.linePar18

package

Definition at line 297 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar19

JPanel denoptim.gui.GAParametersForm.linePar19

package

Definition at line 302 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar2

JPanel denoptim.gui.GAParametersForm.linePar2

package

Definition at line 117 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar20

JPanel denoptim.gui.GAParametersForm.linePar20

package

Definition at line 307 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar21

JPanel denoptim.gui.GAParametersForm.linePar21

package

Definition at line 313 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar22

JPanel denoptim.gui.GAParametersForm.linePar22

package

Definition at line 319 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar24

JPanel denoptim.gui.GAParametersForm.linePar24

package

Definition at line 325 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar25

JPanel denoptim.gui.GAParametersForm.linePar25

package

Definition at line 330 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar3

JPanel denoptim.gui.GAParametersForm.linePar3

package

Definition at line 107 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar5

JPanel denoptim.gui.GAParametersForm.linePar5

package

Definition at line 122 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar6

JPanel denoptim.gui.GAParametersForm.linePar6

package

Definition at line 126 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar7

JPanel denoptim.gui.GAParametersForm.linePar7

package

Definition at line 131 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar8

JPanel denoptim.gui.GAParametersForm.linePar8

package

Definition at line 136 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

linePar9

JPanel denoptim.gui.GAParametersForm.linePar9

package

Definition at line 141 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParCrowd1

JPanel denoptim.gui.GAParametersForm.lineParCrowd1

package

Definition at line 252 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParCrowd2

JPanel denoptim.gui.GAParametersForm.lineParCrowd2

package

Definition at line 257 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParCrowd3

JPanel denoptim.gui.GAParametersForm.lineParCrowd3

package

Definition at line 262 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParCrowd4

JPanel denoptim.gui.GAParametersForm.lineParCrowd4

package

Definition at line 267 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParMolSz1

JPanel denoptim.gui.GAParametersForm.lineParMolSz1

package

Definition at line 182 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParMolSz2

JPanel denoptim.gui.GAParametersForm.lineParMolSz2

package

Definition at line 187 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParMolSz3

JPanel denoptim.gui.GAParametersForm.lineParMolSz3

package

Definition at line 192 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParMolSz4

JPanel denoptim.gui.GAParametersForm.lineParMolSz4

package

Definition at line 197 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParMSM

JPanel denoptim.gui.GAParametersForm.lineParMSM

package

Definition at line 287 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineParWC

JPanel denoptim.gui.GAParametersForm.lineParWC

package

Definition at line 292 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineRingSysTmpl

JPanel denoptim.gui.GAParametersForm.lineRingSysTmpl

package

Definition at line 343 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineRingTmplsFrags

JPanel denoptim.gui.GAParametersForm.lineRingTmplsFrags

package

Definition at line 335 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineRingTmplsScaff

JPanel denoptim.gui.GAParametersForm.lineRingTmplsScaff

package

Definition at line 339 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

lineSrcOrNew

JPanel denoptim.gui.GAParametersForm.lineSrcOrNew

package

Definition at line 97 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

localBlock1

JPanel denoptim.gui.GAParametersForm.localBlock1

package

Definition at line 93 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlock2

JPanel denoptim.gui.GAParametersForm.localBlock2

package

Definition at line 94 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockCrowd3

JPanel denoptim.gui.GAParametersForm.localBlockCrowd3

package

Definition at line 247 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockCrowd4

JPanel denoptim.gui.GAParametersForm.localBlockCrowd4

package

Definition at line 248 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockCrowdGraph

JPanel denoptim.gui.GAParametersForm.localBlockCrowdGraph

package

Definition at line 249 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockLvlProb3

JPanel denoptim.gui.GAParametersForm.localBlockLvlProb3

package

Definition at line 234 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockLvlProb4

JPanel denoptim.gui.GAParametersForm.localBlockLvlProb4

package

Definition at line 235 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockLvlProbAll

JPanel denoptim.gui.GAParametersForm.localBlockLvlProbAll

package

Definition at line 237 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockLvlProbGraph

JPanel denoptim.gui.GAParametersForm.localBlockLvlProbGraph

package

Definition at line 236 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

localBlockMolSz3

JPanel denoptim.gui.GAParametersForm.localBlockMolSz3

package

Definition at line 201 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockMolSz4

JPanel denoptim.gui.GAParametersForm.localBlockMolSz4

package

Definition at line 202 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockMolSzAll

JPanel denoptim.gui.GAParametersForm.localBlockMolSzAll

package

Definition at line 204 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile().

localBlockMolSzGraph

JPanel denoptim.gui.GAParametersForm.localBlockMolSzGraph

package

Definition at line 203 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm().

mapKeyFieldToValueField

Map<String,Object> denoptim.gui.GAParametersForm.mapKeyFieldToValueField

private

Map connecting the parameter keyword and the field containing the parameter value.

Definition at line 90 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.importSingleParameter().

maxLevelCrowdProbPlot

Double denoptim.gui.GAParametersForm.maxLevelCrowdProbPlot = 6.0

package

Definition at line 245 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

maxLevelProbPlot

Double denoptim.gui.GAParametersForm.maxLevelProbPlot = 5.0

package

Definition at line 212 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

maxMolSizeProbPlot

Double denoptim.gui.GAParametersForm.maxMolSizeProbPlot = 50.0

package

Definition at line 179 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

minLevelCrowdProbPlot

Double denoptim.gui.GAParametersForm.minLevelCrowdProbPlot = 0.0

package

Definition at line 244 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

minLevelProbPlot

Double denoptim.gui.GAParametersForm.minLevelProbPlot = 0.0

package

Definition at line 211 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

minMolSizeProbPlot

Double denoptim.gui.GAParametersForm.minMolSizeProbPlot = 1.0

package

Definition at line 178 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSzProbChart(), and denoptim.gui.GAParametersForm.GAParametersForm().

molSizeProbData

DefaultXYDataset denoptim.gui.GAParametersForm.molSizeProbData

package

Definition at line 173 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.createMolSzProbChart(), and denoptim.gui.GAParametersForm.updatemolSizeProbDataset().

NL

String denoptim.gui.GAParametersForm.NL = System.getProperty("line.separator")

package

Definition at line 356 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.putParametersToString().

rbtLevelGrowth

JRadioButton denoptim.gui.GAParametersForm.rbtLevelGrowth

package

Definition at line 170 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.GAParametersForm.putParametersToString().

rbtMolSzGrowth

JRadioButton denoptim.gui.GAParametersForm.rbtMolSzGrowth

package

Definition at line 171 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.GAParametersForm.putParametersToString().

rdbAddH

JRadioButton denoptim.gui.GAParametersForm.rdbAddH

package

Definition at line 164 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

rdbPar5

JRadioButton denoptim.gui.GAParametersForm.rdbPar5

package

Definition at line 123 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

rdbRingTmplsFrags

JRadioButton denoptim.gui.GAParametersForm.rdbRingTmplsFrags

package

Definition at line 336 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

rdbRingTmplsScaff

JRadioButton denoptim.gui.GAParametersForm.rdbRingTmplsScaff

package

Definition at line 340 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

rdbSrcOrNew

JRadioButton denoptim.gui.GAParametersForm.rdbSrcOrNew

package

Definition at line 98 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), denoptim.gui.GAParametersForm.importParametersFromDenoptimParamsFile(), and denoptim.gui.GAParametersForm.putParametersToString().

serialVersionUID

final long denoptim.gui.GAParametersForm.serialVersionUID = 5067352357196631445L

staticprivate

Version.

Definition at line 79 of file GAParametersForm.java.

spnPar12

JSpinner denoptim.gui.GAParametersForm.spnPar12

package

Definition at line 222 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnPar13

JSpinner denoptim.gui.GAParametersForm.spnPar13

package

Definition at line 227 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnPar14

JSpinner denoptim.gui.GAParametersForm.spnPar14

package

Definition at line 232 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createLvlProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParCrowd2

JSpinner denoptim.gui.GAParametersForm.spnParCrowd2

package

Definition at line 259 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParCrowd3

JSpinner denoptim.gui.GAParametersForm.spnParCrowd3

package

Definition at line 264 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParCrowd4

JSpinner denoptim.gui.GAParametersForm.spnParCrowd4

package

Definition at line 269 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createCrowdProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParMolSz2

JSpinner denoptim.gui.GAParametersForm.spnParMolSz2

package

Definition at line 189 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParMolSz3

JSpinner denoptim.gui.GAParametersForm.spnParMolSz3

package

Definition at line 194 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnParMolSz4

JSpinner denoptim.gui.GAParametersForm.spnParMolSz4

package

Definition at line 199 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.createMolSizeProbDataset(), denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

spnRingSysTmpl

JSpinner denoptim.gui.GAParametersForm.spnRingSysTmpl

package

Definition at line 345 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtFrgMols

JTextField denoptim.gui.GAParametersForm.txtFrgMols

package

Definition at line 158 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtGASource

JTextField denoptim.gui.GAParametersForm.txtGASource

package

Definition at line 102 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtMolToGraph

JTextField denoptim.gui.GAParametersForm.txtMolToGraph

package

Definition at line 152 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar1

JTextField denoptim.gui.GAParametersForm.txtPar1

package

Definition at line 114 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar10

JTextField denoptim.gui.GAParametersForm.txtPar10

package

Definition at line 148 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar16

JTextField denoptim.gui.GAParametersForm.txtPar16

package

Definition at line 279 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar17

JTextField denoptim.gui.GAParametersForm.txtPar17

package

Definition at line 284 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar18

JTextField denoptim.gui.GAParametersForm.txtPar18

package

Definition at line 299 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar20

JTextField denoptim.gui.GAParametersForm.txtPar20

package

Definition at line 309 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar21

JTextField denoptim.gui.GAParametersForm.txtPar21

package

Definition at line 315 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar22

JTextField denoptim.gui.GAParametersForm.txtPar22

package

Definition at line 321 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar24

JTextField denoptim.gui.GAParametersForm.txtPar24

package

Definition at line 327 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar3

JTextField denoptim.gui.GAParametersForm.txtPar3

package

Definition at line 109 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar6

JTextField denoptim.gui.GAParametersForm.txtPar6

package

Definition at line 128 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar7

JTextField denoptim.gui.GAParametersForm.txtPar7

package

Definition at line 133 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar8

JTextField denoptim.gui.GAParametersForm.txtPar8

package

Definition at line 138 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtPar9

JTextField denoptim.gui.GAParametersForm.txtPar9

package

Definition at line 143 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtParMSM

JTextField denoptim.gui.GAParametersForm.txtParMSM

package

Definition at line 289 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

txtParWC

JTextField denoptim.gui.GAParametersForm.txtParWC

package

Definition at line 294 of file GAParametersForm.java.

Referenced by denoptim.gui.GAParametersForm.GAParametersForm(), and denoptim.gui.GAParametersForm.putParametersToString().

---

The documentation for this class was generated from the following file:

• /github/workspace/src/main/java/denoptim/gui/GAParametersForm.java