- m -

M2G : denoptim.main.Main.RunType
M2G_PARAM : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
M2G_PARAMS : denoptim.programs.RunTimeParameters.ParametersType
mainPanel : denoptim.gui.GUI, denoptim.gui.GUICardPanel, denoptim.gui.MainToolBar
make3DTrees : denoptim.fitness.FitnessParameters
makePictures : denoptim.fitness.FitnessParameters
MANAGEMWSLOTSSLOCK : denoptim.programs.fragmenter.FragmenterParameters
MANUAL : denoptim.ga.EAUtils.CandidateSource
MANUALADDATTEMPTS : denoptim.logging.CounterID
mapAPs : denoptim.gui.FragmentViewPanel, denoptim.gui.VertexAsGraphViewPanel, denoptim.gui.VertexAsTwoDimStructureViewPanel
mapid : denoptim.programs.genetweeker.GeneOpsRunnerParameters
mapItemsInByLevel : denoptim.gui.GUIInspectFSERun
mapKeyFieldToValueField : denoptim.gui.FitnessParametersForm, denoptim.gui.FSEParametersForm, denoptim.gui.FSParametersForm, denoptim.gui.GAParametersForm, denoptim.gui.GUIPrepareFitnessRunner.InputForm
matchCounter : denoptim.gui.CompatibilityMatrixForm
maxCombs : denoptim.fragspace.APMapFinder, denoptim.fragspace.GraphLinkFinder
maxCoord : denoptim.molecularmodeling.ThreeDimTreeBuilder
maxFragHeavyAtomCount : denoptim.programs.fragmenter.FragmenterParameters
maxGeneticOpAttempts : denoptim.programs.denovo.GAParameters
maxHeavyAtom : denoptim.fragspace.FragmentSpaceParameters
MAXISOMORPHICSAMPLESIZE : denoptim.programs.fragmenter.FragmenterParameters
maxIterations : denoptim.gui.DNPSpringLayout< V, E >
maxLevel : denoptim.gui.GUIInspectFSERun, denoptim.programs.combinatorial.CEBLParameters
maxLevelCrowdProbPlot : denoptim.gui.GAParametersForm
maxLevelProbPlot : denoptim.gui.GAParametersForm
maxLng : denoptim.graph.rings.CyclicGraphHandler
maxMolSizeProbPlot : denoptim.gui.GAParametersForm
maxMW : denoptim.fragspace.FragmentSpaceParameters
maxNoiseUnimodalPop : denoptim.programs.fragmenter.FragmenterParameters
maxOffsprintFromXover : denoptim.programs.denovo.GAParameters
maxParallelPrograms : denoptim.task.StaticTaskManager
maxProgressBar : denoptim.task.StaticTaskManager
maxRcaPerType : denoptim.graph.rings.RingClosureParameters
maxRingClosures : denoptim.graph.rings.RandomCombOfRingsIterator, denoptim.graph.rings.RingClosureParameters
maxRingsAddedByMutation : denoptim.programs.denovo.GAParameters
maxRingSize : denoptim.graph.rings.RingClosureParameters
maxRotatableBond : denoptim.fragspace.FragmentSpaceParameters
maxRotBonds : denoptim.graph.rings.RingClosureParameters
maxSize : denoptim.utils.SizeControlledSet
maxSwappableChainLength : denoptim.programs.genetweeker.GeneOpsRunnerParameters
maxTriesPerPop : denoptim.programs.denovo.GAParameters
maxUIDMemory : denoptim.programs.denovo.GAParameters
maxWait : denoptim.programs.combinatorial.CEBLParameters
maxXOverableSubGraphSize : denoptim.programs.denovo.GAParameters
menu : denoptim.gui.ScrollableJPupupMenu
menuDenoptim : denoptim.gui.MainToolBar
menuFile : denoptim.gui.MainToolBar
menuPanel : denoptim.gui.ScrollableJPupupMenu
message : denoptim.utils.ManySMARTSQuery
metalCoordinatingAPClasses : denoptim.graph.rings.RingClosureParameters
minFitnessSD : denoptim.programs.denovo.GAParameters
minFragHeavyAtomCount : denoptim.programs.fragmenter.FragmenterParameters
MINIMUMJAVAVERSION : denoptim.logging.Version
minLevel : denoptim.gui.GUIInspectFSERun
minLevelCrowdProbPlot : denoptim.gui.GAParametersForm
minLevelProbPlot : denoptim.gui.GAParametersForm
minMolSizeProbPlot : denoptim.gui.GAParametersForm
minRcaPerType : denoptim.graph.rings.RingClosureParameters
minRingClosures : denoptim.graph.rings.RingClosureParameters
minRMSD : denoptim.fragmenter.FragmentAlignement
minSrcAPClassName : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.CompatibilityMatrixForm.CompatRulesHeader
MMB_PARAM : denoptim.programs.RunTimeParameters.ParametersType
mnt : denoptim.ga.OffspringEvaluationTask
mode : denoptim.graph.DGraph.EdgeFinder, denoptim.graph.SymmetricSetWithMode
mol : denoptim.graph.Fragment, denoptim.graph.rings.RingSizeManager, denoptim.graph.Template, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
molCounter : denoptim.utils.GraphUtils
MOLDIGITS : denoptim.constants.DENOPTIMConstants
MolecularFragment : denoptim.graph.Vertex.VertexType
MOLERRORTAG : denoptim.constants.DENOPTIMConstants
molGraph : denoptim.graph.rings.RandomCombOfRingsIterator, denoptim.molecularmodeling.ChemicalObjectModel, denoptim.molecularmodeling.MultiMolecularModelBuilder
molGrowthMultiplier : denoptim.programs.denovo.GAParameters
molGrowthProbabilityScheme : denoptim.programs.denovo.GAParameters
molGrowthSigmaMiddle : denoptim.programs.denovo.GAParameters
molGrowthSigmaSteepness : denoptim.programs.denovo.GAParameters
molId : denoptim.fragspace.IdFragmentAndAP
molLibrary : denoptim.gui.GUIGraphHandler
molName : denoptim.ga.OffspringEvaluationTask, denoptim.integration.tinker.TinkerMolecule, denoptim.molecularmodeling.ChemicalObjectModel, denoptim.molecularmodeling.MultiMolecularModelBuilder
MOLPROPAPxATOM : denoptim.constants.DENOPTIMConstants
MOLPROPAPxBOND : denoptim.constants.DENOPTIMConstants
MOLPROPAPxEDGE : denoptim.constants.DENOPTIMConstants
MOLPROPAPxVID : denoptim.constants.DENOPTIMConstants
MOLSDF : denoptim.files.FileFormat
molSizeProbData : denoptim.gui.GAParametersForm
molsWithFitness : denoptim.gui.GUIInspectGARun
molTyp : denoptim.fragspace.IdFragmentAndAP
molViewer : denoptim.gui.GraphVertexMolViewerPanel, denoptim.gui.GUIInspectFSERun, denoptim.gui.GUIInspectGARun
molViewerCardHolder : denoptim.gui.GraphVertexMolViewerPanel
MOLVIEWERCARDNAME : denoptim.gui.GraphVertexMolViewerPanel, denoptim.gui.VertexViewPanel
molViewerEmptyCard : denoptim.gui.GraphVertexMolViewerPanel
molViewerHeader : denoptim.gui.GraphVertexMolViewerPanel
molViewerNeedUpdateCard : denoptim.gui.GraphVertexMolViewerPanel
molViewerPanel : denoptim.gui.GraphVertexMolViewerPanel
monitorChart : denoptim.gui.GUIInspectGARun
monitorChartPanel : denoptim.gui.GUIInspectGARun
monitorDatasets : denoptim.gui.GUIInspectGARun
monitorDumpStep : denoptim.programs.denovo.GAParameters
monitorFile : denoptim.logging.Monitor, denoptim.programs.denovo.GAParameters
monitorPlot : denoptim.gui.GUIInspectGARun
monitorSeriesBtn : denoptim.gui.GUIInspectGARun
monitorSeriesCheckList : denoptim.gui.GUIInspectGARun
mt : denoptim.utils.Randomizer
mutatedGraphFailedEvalTolerant : denoptim.programs.denovo.GAParameters
MUTATION : denoptim.ga.EAUtils.CandidateSource, denoptim.programs.genetweeker.GeneOpsRunnerParameters.Operator
mutationFailureTolerant : denoptim.programs.denovo.GAParameters
mutationTarget : denoptim.programs.genetweeker.GeneOpsRunnerParameters
mutationType : denoptim.programs.genetweeker.GeneOpsRunnerParameters
mutationWeight : denoptim.programs.denovo.GAParameters
MUTATTEMPTS : denoptim.logging.CounterID
mutliSiteMutationWeights : denoptim.programs.denovo.GAParameters
MUTPARENTSEARCH : denoptim.logging.CounterID
MWSLOTFRAGSALLFILENANEEND : denoptim.constants.DENOPTIMConstants
MWSLOTFRAGSFILENAMEROOT : denoptim.constants.DENOPTIMConstants
MWSLOTFRAGSUNQFILENANEEND : denoptim.constants.DENOPTIMConstants
mwSlotSize : denoptim.programs.fragmenter.FragmenterParameters
mwSlotToAllFragsFile : denoptim.programs.fragmenter.FragmenterParameters
mwSlotToUnqFragsFile : denoptim.programs.fragmenter.FragmenterParameters