- f -

factorForSDOnStatsOfUnimodalPop : denoptim.programs.fragmenter.FragmenterParameters
FAILEDBUILDATTEMPTS : denoptim.logging.CounterID
FAILEDBUILDATTEMPTS_EVAL : denoptim.logging.CounterID
FAILEDBUILDATTEMPTS_FORBIDENDS : denoptim.logging.CounterID
FAILEDBUILDATTEMPTS_GRAPHBUILD : denoptim.logging.CounterID
FAILEDBUILDATTEMPTS_SETUPRINGS : denoptim.logging.CounterID
FAILEDCONVERTBYFRAGATTEMPTS : denoptim.logging.CounterID
FAILEDCONVERTBYFRAGATTEMPTS_EVAL : denoptim.logging.CounterID
FAILEDCONVERTBYFRAGATTEMPTS_FRAGMENTATION : denoptim.logging.CounterID
FAILEDCONVERTBYFRAGATTEMPTS_TMPLEMBEDDING : denoptim.logging.CounterID
FAILEDDUPLICATEPREFITNESSDETECTION : denoptim.logging.CounterID
FAILEDFITNESSEVALS : denoptim.logging.CounterID
FAILEDMANUALADDATTEMPTS : denoptim.logging.CounterID
FAILEDMANUALADDATTEMPTS_EVAL : denoptim.logging.CounterID
FAILEDMUTATTEMTS : denoptim.logging.CounterID
FAILEDMUTATTEMTS_EVAL : denoptim.logging.CounterID
FAILEDMUTATTEMTS_FORBENDS : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_BADMUTTYPE : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDFUSEDRING : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDFUSEDRING_NOBRIDGE : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDFUSEDRING_NOFREEAP : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDFUSEDRING_NOSITE : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDLINK : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDLINK_EDIT : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDLINK_FIND : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDRING : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDRING_NOFREEAP : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOADDRING_NORINGCOMB : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOCHANGEBRANCH : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOCHANGELINK : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOCHANGELINK_EDIT : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOCHANGELINK_FIND : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NODELETE : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NODELETECHAIN : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NODELLINK_EDIT : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NODELLINK_FINDPARENT : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOEXTEND : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOMUTSITE : denoptim.logging.CounterID
FAILEDMUTATTEMTS_PERFORM_NOOWNER : denoptim.logging.CounterID
FAILEDMUTATTEMTS_SETUPRINGS : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS_EVAL : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS_FINDPARENTS : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS_FORBENDS : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS_PERFORM : denoptim.logging.CounterID
FAILEDXOVERATTEMPTS_SETUPRINGS : denoptim.logging.CounterID
fakeErrorMsg : denoptim.fitness.descriptors.SocketProvidedDescriptorTest
fapid : denoptim.programs.genetweeker.GeneOpsRunnerParameters
ff : denoptim.gui.MainToolBar.RecentFileItem
ffAtomType : denoptim.integration.tinker.TinkerAtom
fieldListener : denoptim.gui.ParametersForm
file : denoptim.files.FileAndFormat, denoptim.gui.MainToolBar.RecentFileItem
fileChooser : denoptim.gui.GUIFileOpener, denoptim.gui.GUIFileSaver
fileFieldSize : denoptim.gui.ParametersForm
fileIterator : denoptim.io.IteratingAtomContainerReader
fileLabelSize : denoptim.gui.GUIAPClassDefinitionDialog, denoptim.gui.GUIPreferencesDialog, denoptim.gui.ParametersForm
fingerprinter : denoptim.fitness.descriptors.TanimotoMolSimilarity, denoptim.fitness.descriptors.TanimotoMolSimilarityBySubstructure
fingerprinterName : denoptim.fitness.descriptors.TanimotoMolSimilarity
finished : denoptim.fragspace.FragsCombinationIterator
firstAfterRestart : denoptim.combinatorial.CombinatorialExplorerByLayer
FIT : denoptim.main.Main.RunType
FIT_PARAMS : denoptim.programs.RunTimeParameters.ParametersType
FITFILENAMEEXTIN : denoptim.constants.DENOPTIMConstants
FITFILENAMEEXTOUT : denoptim.constants.DENOPTIMConstants
FITFILENAMEPREFIX : denoptim.constants.DENOPTIMConstants
fitFormUID : denoptim.gui.FitnessParametersForm
fitness : denoptim.graph.Candidate, denoptim.graph.CandidateLW
FITNESSEVALS : denoptim.logging.CounterID
fitnessExpression : denoptim.fitness.FitnessParameters
fitnessIsRequired : denoptim.task.FitnessTask
fitnessSettings : denoptim.task.FitnessTask
FITNESSTAG : denoptim.constants.DENOPTIMConstants
fitProvInputFile : denoptim.task.FitnessTask
fitProvMol : denoptim.task.FitnessTask
fitProvOutFile : denoptim.task.FitnessTask
fitProvPNGFile : denoptim.task.FitnessTask
fitProvUIDFile : denoptim.task.FitnessTask
FIXED : denoptim.graph.Template.ContractLevel
FIXED_STRUCT : denoptim.graph.Template.ContractLevel
flags : denoptim.utils.AtomOrganizer
FLOATCOMPARISONTOLERANCE : denoptim.constants.DENOPTIMConstants
fm : denoptim.fitness.FitnessExpressionParser.CustomVariableDefiningContext, denoptim.fitness.FitnessExpressionParser.VariableDefiningContext
fmol : denoptim.molecularmodeling.ChemicalObjectModel
forbiddenEndList : denoptim.fragspace.FragmentSpace, denoptim.gui.CompatibilityMatrixForm
forceFieldFile : denoptim.programs.moldecularmodelbuilder.MMBuilderParameters
format : denoptim.files.FileAndFormat
formulaCriteriaLessThan : denoptim.programs.fragmenter.FragmenterParameters
formulaCriteriaMoreThan : denoptim.programs.fragmenter.FragmenterParameters
formulae : denoptim.programs.fragmenter.FragmenterParameters
formulaeFile : denoptim.programs.fragmenter.FragmenterParameters
FORMULASTR : denoptim.constants.DENOPTIMConstants
foundCLIOnlyContent : denoptim.gui.ParametersForm
foundNewLink : denoptim.fragspace.GraphLinkFinder
FR_PARAM : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
FR_PARAMS : denoptim.programs.RunTimeParameters.ParametersType
frag : denoptim.fragmenter.ClusterableFragment
FRAG : denoptim.gui.GraphViewerPanel.JVertexType
fragA : denoptim.graph.FragmentIsomorphismInspector
fragAlgorithm : denoptim.programs.fragmenter.Fragmenter
fragB : denoptim.graph.FragmentIsomorphismInspector
fragIds : denoptim.ga.GraphOperations.FragForClosabChains
FRAGMENT : denoptim.graph.Vertex.BBType
fragment : denoptim.gui.FragmentViewPanel
fragmentLib : denoptim.fragspace.FragmentSpace
fragmentLibFile : denoptim.fragspace.FragmentSpaceParameters
fragmentPool : denoptim.ga.EAUtils
fragmentSpace : denoptim.fragspace.GraphLinkFinder
fragPoolPerNumAP : denoptim.fragspace.FragmentSpace
fragRejectionSMARTS : denoptim.programs.fragmenter.FragmenterParameters
fragRetentionSMARTS : denoptim.programs.fragmenter.FragmenterParameters
fragsApsPerApClass : denoptim.fragspace.FragmentSpace
fragSpace : denoptim.combinatorial.GraphBuildingTask, denoptim.fragspace.APMapFinder, denoptim.ga.OffspringEvaluationTask, denoptim.graph.rings.CyclicGraphHandler, denoptim.graph.rings.RandomCombOfRingsIterator, denoptim.graph.rings.RingSizeManager, denoptim.gui.GUIGraphHandler, denoptim.programs.fitnessevaluator.FitnessEvaluationTask, denoptim.programs.genetweeker.GeneOpsRunner
fragsToAdd : denoptim.combinatorial.GraphBuildingTask
fragViewer : denoptim.gui.GraphVertexMolViewerPanel, denoptim.gui.VertexViewPanel
fragViewerCardHolder : denoptim.gui.GraphVertexMolViewerPanel
FRAGVIEWERCARDNAME : denoptim.gui.GraphVertexMolViewerPanel
fragViewerEmptyCard : denoptim.gui.GraphVertexMolViewerPanel
fragViewerHeader : denoptim.gui.GraphVertexMolViewerPanel
fragViewerNoFSCard : denoptim.gui.GraphVertexMolViewerPanel
fragViewerNotDuableCard : denoptim.gui.GraphVertexMolViewerPanel
fragViewerPanel : denoptim.gui.GraphVertexMolViewerPanel
fragViewerTmplViewerCard : denoptim.gui.GraphVertexMolViewerPanel
frame : denoptim.gui.GUI
framePane : denoptim.gui.GUI
FREE : denoptim.graph.Template.ContractLevel
FRG : denoptim.main.Main.RunType
FRG_PARAM : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
FRG_PARAMS : denoptim.programs.RunTimeParameters.ParametersType
FRG_RUN : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
frgParams : denoptim.gui.CuttingRulesSelectionDialog
frSettings : denoptim.programs.fitnessevaluator.FitnessEvaluationTask
FS : denoptim.fitness.DescriptorUtils, denoptim.io.DenoptimIO
FS_PARAMS : denoptim.programs.RunTimeParameters.ParametersType
FSE : denoptim.main.Main.RunType
FSE_PARAM : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
FSE_RUN : denoptim.files.FileFormat.DataKind, denoptim.files.FileFormat
FSEIDXNAMEROOT : denoptim.constants.DENOPTIMConstants
fseInspectorTabUID : denoptim.gui.GUIInspectFSERun
FSEP : denoptim.constants.DENOPTIMConstants, denoptim.ga.EAUtils, denoptim.integration.tinker.ConformationalSearchPSSROT
fsep : denoptim.molecularmodeling.RingClosureTool
fsParsForm : denoptim.gui.FSParamsDialog
fsSettings : denoptim.combinatorial.CombinatorialExplorerByLayer
ftype : denoptim.graph.rings.ChainLink
futures : denoptim.ga.EvolutionaryAlgorithm, denoptim.programs.fitnessevaluator.FPRunner, denoptim.task.ParallelAsynchronousTaskExecutor, denoptim.task.TasksBatchManager
futureWatchers : denoptim.programs.denovo.GARunner