- d -

d : denoptim.graph.DGraphTest
data : denoptim.fragmenter.FragmentClusterer, denoptim.ga.Population.XoverSitesAmongCandidates, denoptim.integration.python.Py4JGetawayServer, denoptim.utils.SizeControlledSet
dataDir : denoptim.programs.denovo.GAParameters
dataOnDisk : denoptim.utils.SizeControlledSet
datasetAllFit : denoptim.gui.GUIInspectFSERun, denoptim.gui.GUIInspectGARun
datasetPopMax : denoptim.gui.GUIInspectGARun
datasetPopMean : denoptim.gui.GUIInspectGARun
datasetPopMedian : denoptim.gui.GUIInspectGARun
datasetPopMin : denoptim.gui.GUIInspectGARun
datasetSelected : denoptim.gui.GUIInspectGARun
datasetSelectedLev : denoptim.gui.GUIInspectFSERun
datasetSelectedOrd : denoptim.gui.GUIInspectFSERun
datasetSorted : denoptim.gui.GUIInspectFSERun
dataTable : denoptim.gui.MoleculeViewPanel
dataTabModel : denoptim.gui.MoleculeViewPanel
dataTabPopMenu : denoptim.gui.MoleculeViewPanel
DATE : denoptim.logging.Version
dbRootDir : denoptim.programs.combinatorial.CEBLParameters
debug : denoptim.graph.rings.PathSubGraph, denoptim.integration.tinker.TinkerMolecule, denoptim.integration.tinker.TinkerUtils, denoptim.programs.moldecularmodelbuilder.MMBuilderParameters, denoptim.utils.Randomizer
DEFAULT_APCLASS : denoptim.ga.GraphOperationsTest
DEFAULTBACKGROUND : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.CompatibilityMatrixForm.CompatRulesHeader, denoptim.gui.CompatibilityMatrixForm.TargetAPClassToken
DEFAULTBT : denoptim.graph.APClass
defaultRulesTabModel : denoptim.gui.CuttingRulesSelectionDialog
DEFDIVLOC : denoptim.gui.GraphVertexMolViewerPanel
defDivLoc : denoptim.gui.GraphVertexMolViewerPanel
definingRegex : denoptim.files.FileFormat
defualtSDFTags : denoptim.gui.GUIPreferences
DEFUIDFILEOUTNAME : denoptim.programs.denovo.GAParameters
DELETE : denoptim.utils.MutationType
DELETECHAIN : denoptim.utils.MutationType
DELETELINK : denoptim.utils.MutationType
DELETEVERTEX : denoptim.utils.GraphEdit.EditTask
descDefinitionPane : denoptim.gui.FitnessParametersForm
descDefScrollPane : denoptim.gui.FitnessParametersForm
descName : denoptim.fitness.Variable
descNameToTune : denoptim.gui.FitnessParametersForm
description : denoptim.logging.CounterID, denoptim.main.Main.RunType
descriptor : denoptim.fitness.descriptors.SocketProvidedDescriptorTest, denoptim.fitness.descriptors.TanimotoMolSimilarityTest
descriptors : denoptim.fitness.FitnessExpressionParser, denoptim.fitness.FitnessParameters, denoptim.fitness.FitnessProvider
df : denoptim.ga.EAUtils
dff : denoptim.gui.FitnessParametersForm.DescriptorTreeNode
dGraph : denoptim.task.FitnessTask
dictClasses : denoptim.fitness.DescriptorForFitness
dictDefinition : denoptim.fitness.DescriptorForFitness
dictTitle : denoptim.fitness.DescriptorForFitness
dihedralRefPts : denoptim.graph.rings.PathSubGraph
dirVec : denoptim.graph.AttachmentPoint
DIRVEC : denoptim.graph.AttachmentPointTest
displayAPCs : denoptim.gui.GraphViewerPanel.JEdge
displayAPIDs : denoptim.gui.GraphViewerPanel.JEdge
displayBBID : denoptim.gui.GraphViewerPanel.JVertex
displayBndTyp : denoptim.gui.GraphViewerPanel.JEdge
distAngles : denoptim.integration.tinker.TinkerAtom
distH1T2 : denoptim.graph.rings.RingClosure
distH2T1 : denoptim.graph.rings.RingClosure
distH2T2 : denoptim.graph.rings.RingClosure
dnGraph : denoptim.gui.GraphVertexMolViewerPanel, denoptim.gui.GUIGraphHandler
dnGraphLibrary : denoptim.gui.GUIGraphHandler
dnpVertex : denoptim.gui.GraphViewerPanel.JVertex
doAddDuOnLinearity : denoptim.programs.fragmenter.FragmenterParameters
doExtactRepresentativeConformer : denoptim.programs.fragmenter.FragmenterParameters
doFiltering : denoptim.programs.fragmenter.FragmenterParameters
doFragmentation : denoptim.programs.fragmenter.FragmenterParameters
doManageIsomorphicFamilies : denoptim.programs.fragmenter.FragmenterParameters
done : denoptim.graph.rings.RingSizeManager
doRejectWeirdIsotopes : denoptim.programs.fragmenter.FragmenterParameters
DOUBLE : denoptim.graph.Edge.BondType
DRY : denoptim.main.Main.RunType
dummyApA1 : denoptim.graph.EdgeTest
dummyApA2 : denoptim.graph.EdgeTest
dummyApB : denoptim.graph.EdgeTest
DUMMYATMSYMBOL : denoptim.constants.DENOPTIMConstants
dummyVertexA : denoptim.graph.EdgeTest
dummyVertexB : denoptim.graph.EdgeTest
dumpData : denoptim.logging.Monitor
dumpMonitor : denoptim.programs.denovo.GAParameters
dumpsId : denoptim.logging.Monitor
dumpStep : denoptim.logging.Monitor
DUPLICATEPREFITNESS : denoptim.logging.CounterID