Package denoptim.graph

Packages
package	rings
package	simplified

Classes
class	APClass
class	APClassTest
	Unit test for APClass. More...
class	APMapping
	Class representing a mapping between attachment points (APs). More...
class	APTreeMap
	Attachment point mapping where keys are sorted by natural ordering, i.e., by AttachmentPoint#compareTo(AttachmentPoint). More...
class	AttachmentPoint
	An attachment point (AP) is a possibility to attach a Vertex onto the vertex holding the AP (i.e., the owner of the AP), this way forming a new Edge (i.e., the user of the AP). More...
class	AttachmentPointComparator
	Comparator for DENOPTIMAttachmentPoints. More...
class	AttachmentPointTest
	Unit test for DENOPTIMAttachmentPoint. More...
class	Candidate
	A candidate is the combination of a denoptim graph with molecular representation and may include also fitness/error, and possibly other stuff. More...
class	CandidateLW
	A light-weight candidate is a very low-demanding collection of data upon a specific candidate item. More...
class	DGraph
	Container for the list of vertices and the edges that connect them. More...
class	DGraphTest
	Unit test for DENOPTIMGraph. More...
class	Edge
	This class represents the edge between two vertices. More...
class	EdgeQuery
	A query for edges: a list of properties that target edges should possess in order to match this query. More...
class	EdgeTest
	Unit test for DENOPTIMEdge. More...
class	EmptyVertex
	An empty vertex has the behaviors of a vertex, but has no molecular structure. More...
class	FragIsomorphEdge
class	FragIsomorphNode
class	Fragment
	Class representing a continuously connected portion of chemical object holding attachment points. More...
class	FragmentIsomorphismInspector
class	FragmentIsomorphismInspectorTest
	Unit test for isomorphism inspector. More...
class	FragmentTest
	Unit test for DENOPTIMFragment. More...
enum	GraphPattern
class	RelatedAPPair
	Class representing a pair of AttachmentPoints related by some property that is defined by string. More...
class	RelatedAPPairTest
class	Ring
	This class represents the closure of a ring in a spanning tree. More...
class	RingTest
	Unit test. More...
class	SymmetricAPs
	A collection of AttachmentPoints that are related by a relation that we call "symmetry", even though this class does not define what such relation is. More...
class	SymmetricAPsTest
class	SymmetricSet
	Class representing a list of references pointing to instances that are related by some conventional criterion that is referred to as "symmetry relation". More...
class	SymmetricSetWithMode
	Class coupling a reference to a SymmetricSet with a string that we call "mode" and can is used to store any sort of information. More...
class	SymmetricSetWithModeTest
class	SymmetricVertexes
	A collection of Vertexs that are related by a relation that we call "symmetry", even though this class does not define what such relation is. More...
class	Template
class	TemplateTest
	Unit test for DENOPTIMTemplate. More...
class	UndirectedEdgeRelationTest
	Unit test for UndirectedEdge. More...
class	Vertex
	A vertex is a data structure that has an identity and holds a list of AttachmentPoints. More...
class	VertexQuery
	Query for searching vertices. More...
class	VertexTest
	Unit test for DENOPTIMVertex. More...