$darkmode
- m -
- main() : denoptim.main.Main
- MainToolBar() : denoptim.gui.MainToolBar
- make() : denoptim.graph.APClass
- make3dTree() : denoptim.fitness.FitnessParameters
- make3DusingCDKgenerator() : denoptim.gui.FragmentViewPanel
- makeAllGraphsWithDifferentRingSets() : denoptim.graph.DGraph
- makeCheckPoint() : denoptim.combinatorial.CombinatorialExplorerByLayer
- makeCopy() : denoptim.fitness.DescriptorForFitness
- makeDeeplyEmbeddedGraph() : denoptim.graph.DGraphTest
- makeDisorderedGraph() : denoptim.graph.DGraphTest
- makeFragment() : denoptim.graph.FragmentTest
- makeFragmentA() : denoptim.graph.FragmentTest
- makeFragmentB() : denoptim.graph.FragmentTest
- makeFragmentC() : denoptim.graph.FragmentTest
- makeFragSpace() : denoptim.gui.FSParamsDialog
- makeGraphA() : denoptim.ga.PopulationTest
- makeGraphB() : denoptim.ga.PopulationTest
- makeGraphC() : denoptim.ga.PopulationTest
- makeGraphD() : denoptim.ga.PopulationTest
- makeGraphE() : denoptim.ga.PopulationTest
- makeGraphF() : denoptim.ga.PopulationTest
- makeGraphFromFragmentationOfMol() : denoptim.ga.EAUtils
- makeIBitFingerprint() : denoptim.fitness.FitnessExpressionParser
- makeIBitFingerprintBySubstructure() : denoptim.fitness.FitnessExpressionParser
- makeIFingerprinter() : denoptim.fitness.descriptors.TanimotoMolSimilarity, denoptim.fitness.FitnessExpressionParser
- makeInvariant() : denoptim.graph.simplified.UndirectedEdge
- makeIsostructuralGraphs() : denoptim.graph.DGraphTest
- makeMolecularRepresentation() : denoptim.graph.rings.PathSubGraph
- makeOffspringA() : denoptim.ga.EvolutionaryAlgorithm
- makeOffspringB() : denoptim.ga.EvolutionaryAlgorithm
- makePathologicalFragment() : denoptim.graph.FragmentIsomorphismInspectorTest
- makePictures() : denoptim.fitness.FitnessParameters
- makeRandomScaffold() : denoptim.fragspace.FragmentSpace
- makeReorderedCopy() : denoptim.utils.AtomOrganizer
- makeSameAs() : denoptim.utils.MoleculeUtils
- makeSameAtomAs() : denoptim.utils.MoleculeUtils
- makeStringArray() : denoptim.fitness.FitnessExpressionParser
- makeTestGraph0() : denoptim.graph.DGraphTest
- makeTestGraph1() : denoptim.graph.DGraphTest
- makeTestGraphA() : denoptim.fragspace.GraphLinkFinderTest, denoptim.graph.DGraphTest, denoptim.graph.rings.PathSubGraphTest, denoptim.graph.rings.RingSizeManagerTest
- makeTestGraphA2() : denoptim.graph.DGraphTest
- makeTestGraphB() : denoptim.graph.DGraphTest, denoptim.graph.rings.PathSubGraphTest
- makeTestGraphC() : denoptim.graph.DGraphTest
- makeTestGraphD() : denoptim.graph.DGraphTest
- makeTestGraphDSub1() : denoptim.graph.DGraphTest
- makeTestGraphDSub2() : denoptim.graph.DGraphTest
- makeTestGraphE() : denoptim.fragspace.GraphLinkFinderTest, denoptim.graph.DGraphTest
- makeTestGraphF() : denoptim.fragspace.GraphLinkFinderTest, denoptim.graph.DGraphTest
- makeTestGraphG() : denoptim.graph.DGraphTest
- makeTestGraphH() : denoptim.graph.DGraphTest
- makeTestGraphI() : denoptim.graph.DGraphTest
- makeTestGraphJ() : denoptim.graph.DGraphTest
- makeTestGraphK() : denoptim.graph.DGraphTest
- makeTestGraphL() : denoptim.graph.DGraphTest
- makeTestGraphM() : denoptim.graph.DGraphTest
- makeTestGraphN() : denoptim.graph.DGraphTest
- manageFragmentCollection() : denoptim.fragmenter.FragmenterTools
- ManySMARTSQuery() : denoptim.utils.ManySMARTSQuery
- mapAPClassCompatibilities() : denoptim.fragspace.FragmentSpace
- MatchedBond() : denoptim.programs.fragmenter.MatchedBond
- matches() : denoptim.io.SMILESListFormat
- matchesAPClass() : denoptim.gui.CompatibilityMatrixForm.TargetAPClassToken
- matchesExpected() : denoptim.ga.GraphOperationsTest.ExtractPatternCase
- max() : denoptim.utils.StatUtils
- maxOffsprintFromXover() : denoptim.programs.denovo.GAParameters
- mean() : denoptim.utils.MathUtils, denoptim.utils.StatUtils
- median() : denoptim.utils.StatUtils
- mergeClusters() : denoptim.fragmenter.FragmentClusterer
- mergeIntoOneFile() : denoptim.files.FileUtils
- min() : denoptim.utils.StatUtils
- missmatchingAromaticity() : denoptim.utils.MoleculeUtils
- MMBuilderParameters() : denoptim.programs.moldecularmodelbuilder.MMBuilderParameters
- Mol2Graph() : denoptim.programs.mol2graph.Mol2Graph
- Mol2GraphParameters() : denoptim.programs.mol2graph.Mol2GraphParameters
- MolecularModelBuilder() : denoptim.programs.moldecularmodelbuilder.MolecularModelBuilder
- moleculeToPNG() : denoptim.utils.MoleculeUtils
- MoleculeViewPanel() : denoptim.gui.MoleculeViewPanel
- MolToGraphParametersDialog() : denoptim.gui.MolToGraphParametersDialog
- Monitor() : denoptim.logging.Monitor
- mouseClicked() : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseDragged() : denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseEntered() : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseExited() : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseMoved() : denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mousePressed() : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseReleased() : denoptim.gui.CompatibilityMatrixForm.CompatibilityRuleLine, denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- mouseWheelMoved() : denoptim.gui.VertexAsTwoDimStructureViewPanel.TwoDimStructurePanel
- moveDividerLocation() : denoptim.gui.GraphVertexMolViewerPanel
- moveTo() : denoptim.integration.tinker.TinkerAtom
- MultiMolecularModelBuilder() : denoptim.molecularmodeling.MultiMolecularModelBuilder
- mustParseToInt() : denoptim.gui.GUIPreferencesDialog
- MyJSVGCanvas() : denoptim.gui.CuttingRulesSelectionDialog.MyJSVGCanvas