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DENOPTIM
Public Member Functions | Private Member Functions | Static Private Attributes | List of all members
denoptim.fragspace.GraphLinkFinderTest Class Reference

Unit test. More...

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Public Member Functions

void testLinkFromVertex () throws Exception
 
void testLinkFromEdge () throws Exception
 
void testLinkFromEdgeOneMatch () throws Exception
 
void testLinkFromEdgeNoMatch () throws Exception
 

Private Member Functions

FragmentSpace prepare () throws DENOPTIMException
 
DGraph makeTestGraphA () throws DENOPTIMException
 Creates a test graph that looks like this: v0(A)-(A)v1(B)-(B)v2. More...
 
DGraph makeTestGraphE () throws DENOPTIMException
 Creates a test graph that looks like this: v0(E)-(E)v1. More...
 
DGraph makeTestGraphF () throws DENOPTIMException
 Creates a test graph that looks like this: v0(F)-(F)v1. More...
 
void ensureConsistencyWithExpectations (Map< Integer, List< APClass > > expected, Map< Vertex, List< APMapping > > actual)
 

Static Private Attributes

static APClass APCA
 
static APClass APCB
 
static APClass APCC
 
static APClass APCD
 
static APClass APCE
 
static APClass APCF
 

Detailed Description

Unit test.

Author
Marco Foscato

Definition at line 52 of file GraphLinkFinderTest.java.

Member Function Documentation

◆ ensureConsistencyWithExpectations()

void denoptim.fragspace.GraphLinkFinderTest.ensureConsistencyWithExpectations ( Map< Integer, List< APClass > >  expected,
Map< Vertex, List< APMapping > >  actual 
)
private

Definition at line 416 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge(), denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeNoMatch(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeOneMatch().

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◆ makeTestGraphA()

DGraph denoptim.fragspace.GraphLinkFinderTest.makeTestGraphA ( ) throws DENOPTIMException
private

Creates a test graph that looks like this: v0(A)-(A)v1(B)-(B)v2.

Exceptions
DENOPTIMException

Definition at line 230 of file GraphLinkFinderTest.java.

References denoptim.graph.DGraph.addEdge(), denoptim.graph.DGraph.addVertex(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.graph.Vertex.getAP(), denoptim.fragspace.FragmentSpace.getVertexFromLibrary(), denoptim.fragspace.GraphLinkFinderTest.prepare(), denoptim.graph.DGraph.renumberGraphVertices(), and denoptim.graph.Vertex.BBType.SCAFFOLD.

Referenced by denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromVertex().

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◆ makeTestGraphE()

DGraph denoptim.fragspace.GraphLinkFinderTest.makeTestGraphE ( ) throws DENOPTIMException
private

Creates a test graph that looks like this: v0(E)-(E)v1.

Exceptions
DENOPTIMException

Definition at line 253 of file GraphLinkFinderTest.java.

References denoptim.graph.DGraph.addEdge(), denoptim.graph.DGraph.addVertex(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.graph.Vertex.getAP(), denoptim.fragspace.FragmentSpace.getVertexFromLibrary(), denoptim.fragspace.GraphLinkFinderTest.prepare(), and denoptim.graph.DGraph.renumberGraphVertices().

Referenced by denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeOneMatch().

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◆ makeTestGraphF()

DGraph denoptim.fragspace.GraphLinkFinderTest.makeTestGraphF ( ) throws DENOPTIMException
private

Creates a test graph that looks like this: v0(F)-(F)v1.

Exceptions
DENOPTIMException

Definition at line 273 of file GraphLinkFinderTest.java.

References denoptim.graph.DGraph.addEdge(), denoptim.graph.DGraph.addVertex(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.graph.Vertex.getAP(), denoptim.fragspace.FragmentSpace.getVertexFromLibrary(), denoptim.fragspace.GraphLinkFinderTest.prepare(), and denoptim.graph.DGraph.renumberGraphVertices().

Referenced by denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeNoMatch().

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◆ prepare()

FragmentSpace denoptim.fragspace.GraphLinkFinderTest.prepare ( ) throws DENOPTIMException
private

Definition at line 58 of file GraphLinkFinderTest.java.

References denoptim.graph.EmptyVertex.addAP(), denoptim.fragspace.GraphLinkFinderTest.APCA, denoptim.fragspace.GraphLinkFinderTest.APCB, denoptim.fragspace.GraphLinkFinderTest.APCC, denoptim.fragspace.GraphLinkFinderTest.APCD, denoptim.fragspace.GraphLinkFinderTest.APCE, denoptim.fragspace.GraphLinkFinderTest.APCF, denoptim.fragspace.FragmentSpace.appendVertexToLibrary(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.fragspace.FragmentSpace.getFragmentLibrary(), denoptim.fragspace.FragmentSpace.getScaffoldLibrary(), denoptim.fragspace.FragmentSpace.groupAndClassifyFragments(), denoptim.graph.APClass.make(), denoptim.graph.Vertex.BBType.SCAFFOLD, denoptim.fragspace.FragmentSpace.setAPclassBasedApproach(), and denoptim.graph.Vertex.setBuildingBlockType().

Referenced by denoptim.fragspace.GraphLinkFinderTest.makeTestGraphA(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphE(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphF(), denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge(), denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeNoMatch(), denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeOneMatch(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromVertex().

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◆ testLinkFromEdge()

void denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge ( ) throws Exception

Definition at line 325 of file GraphLinkFinderTest.java.

References denoptim.fragspace.GraphLinkFinderTest.APCB, denoptim.fragspace.GraphLinkFinderTest.APCC, denoptim.fragspace.GraphLinkFinderTest.ensureConsistencyWithExpectations(), denoptim.fragspace.GraphLinkFinder.getAllAlternativesFound(), denoptim.graph.DGraph.getEdgeAtPosition(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphA(), and denoptim.fragspace.GraphLinkFinderTest.prepare().

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◆ testLinkFromEdgeNoMatch()

void denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeNoMatch ( ) throws Exception

Definition at line 396 of file GraphLinkFinderTest.java.

References denoptim.fragspace.GraphLinkFinderTest.ensureConsistencyWithExpectations(), denoptim.fragspace.GraphLinkFinder.getAllAlternativesFound(), denoptim.graph.DGraph.getEdgeAtPosition(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphF(), and denoptim.fragspace.GraphLinkFinderTest.prepare().

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◆ testLinkFromEdgeOneMatch()

void denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeOneMatch ( ) throws Exception

Definition at line 371 of file GraphLinkFinderTest.java.

References denoptim.fragspace.GraphLinkFinderTest.APCE, denoptim.fragspace.GraphLinkFinderTest.ensureConsistencyWithExpectations(), denoptim.fragspace.GraphLinkFinder.getAllAlternativesFound(), denoptim.graph.DGraph.getEdgeAtPosition(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphE(), and denoptim.fragspace.GraphLinkFinderTest.prepare().

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◆ testLinkFromVertex()

void denoptim.fragspace.GraphLinkFinderTest.testLinkFromVertex ( ) throws Exception

Definition at line 289 of file GraphLinkFinderTest.java.

References denoptim.fragspace.GraphLinkFinder.getAllAlternativesFound(), denoptim.graph.DGraph.getVertexAtPosition(), denoptim.fragspace.GraphLinkFinderTest.makeTestGraphA(), and denoptim.fragspace.GraphLinkFinderTest.prepare().

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Member Data Documentation

◆ APCA

APClass denoptim.fragspace.GraphLinkFinderTest.APCA
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare().

◆ APCB

APClass denoptim.fragspace.GraphLinkFinderTest.APCB
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge().

◆ APCC

APClass denoptim.fragspace.GraphLinkFinderTest.APCC
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdge().

◆ APCD

APClass denoptim.fragspace.GraphLinkFinderTest.APCD
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare().

◆ APCE

APClass denoptim.fragspace.GraphLinkFinderTest.APCE
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare(), and denoptim.fragspace.GraphLinkFinderTest.testLinkFromEdgeOneMatch().

◆ APCF

APClass denoptim.fragspace.GraphLinkFinderTest.APCF
staticprivate

Definition at line 54 of file GraphLinkFinderTest.java.

Referenced by denoptim.fragspace.GraphLinkFinderTest.prepare().

The documentation for this class was generated from the following file: