denoptim.graph.rings.RingSizeManagerTest Class Reference

Unit test for ring size manager. More...

Public Member Functions
void	testEvaluateRCVPair () throws Exception

Static Public Member Functions
static DGraph	makeTestGraphA () throws DENOPTIMException
	Build a graph meant to be used in unit tests. More...

Detailed Description

Unit test for ring size manager.

Author

Marco Foscato

Definition at line 61 of file RingSizeManagerTest.java.

Member Function Documentation

makeTestGraphA()

static DGraph denoptim.graph.rings.RingSizeManagerTest.makeTestGraphA ( ) throws DENOPTIMException

static

Build a graph meant to be used in unit tests.

The returned graph has the following structure:

       
       RCV_P  RCV_P               RCV_P  RCV_M
        |      |                   |      |
RCV_M--[O]----[C]--[C]--[C]--[C]--[C]----[N]--RCV_M
       vO     vC   vC2  vC3  vC4  vC5    vN

<br>return a new instance of the test graph.

Exceptions

DENOPTIMException

Definition at line 79 of file RingSizeManagerTest.java.

References denoptim.graph.Fragment.addAP(), denoptim.graph.DGraph.addVertex(), denoptim.graph.DGraph.appendVertexOnAP(), denoptim.graph.Fragment.clone(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.graph.Vertex.getAP(), denoptim.graph.APClass.make(), denoptim.graph.APClass.RCACLASSMINUS, denoptim.graph.APClass.RCACLASSPLUS, denoptim.graph.rings.RingClosingAttractor.RCALABELPERAPCLASS, denoptim.graph.Vertex.setAsRCV(), and denoptim.graph.Vertex.setVertexId().

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testEvaluateRCVPair()

void denoptim.graph.rings.RingSizeManagerTest.testEvaluateRCVPair

(

)

throws Exception

Definition at line 175 of file RingSizeManagerTest.java.

References denoptim.graph.Fragment.addAP(), denoptim.graph.DGraph.addVertex(), denoptim.graph.DGraph.appendVertexOnAP(), denoptim.graph.Fragment.clone(), denoptim.molecularmodeling.ThreeDimTreeBuilder.convertGraphTo3DAtomContainer(), denoptim.graph.Vertex.BBType.FRAGMENT, denoptim.graph.Vertex.getAP(), denoptim.graph.rings.RingSizeManager.getCompatibilityOfPair(), denoptim.graph.DGraph.getRCVertices(), denoptim.graph.rings.RingSizeManager.getRSBiasedListOfCandidates(), denoptim.graph.rings.RingSizeManager.initialize(), denoptim.graph.APClass.make(), denoptim.graph.APClass.RCACLASSMINUS, denoptim.graph.APClass.RCACLASSPLUS, denoptim.graph.rings.RingClosingAttractor.RCALABELPERAPCLASS, denoptim.molecularmodeling.ThreeDimTreeBuilder.setAlignBBsIn3D(), denoptim.fragspace.FragmentSpace.setAPclassBasedApproach(), denoptim.graph.Vertex.setAsRCV(), denoptim.graph.rings.RingClosureParameters.setRingSizeBias(), and denoptim.graph.Vertex.setVertexId().

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The documentation for this class was generated from the following file:

• /github/workspace/src/test/java/denoptim/graph/rings/RingSizeManagerTest.java