| addToCentralPane(JComponent comp) | denoptim.gui.GUIModalDialog | |
| addToNorthPane(JComponent comp) | denoptim.gui.GUIModalDialog | |
| appendToCentralPanel(JComponent panel) | denoptim.gui.CuttingRulesSelectionDialog | protected |
| btnCanc | denoptim.gui.GUIModalDialog | protected |
| btnDone | denoptim.gui.GUIModalDialog | protected |
| btnExtra | denoptim.gui.GUIModalDialog | protected |
| buildCustomRulesTable(List< CuttingRule > customCuttingRules, String[] emptyRow) | denoptim.gui.CuttingRulesSelectionDialog | private |
| centralPanel | denoptim.gui.CuttingRulesSelectionDialog | protected |
| chosenOnes | denoptim.gui.CuttingRulesSelectionDialog | protected |
| close() | denoptim.gui.GUIModalDialog | protected |
| cmbScaffoldingPolicy | denoptim.gui.MolToGraphParametersDialog | private |
| cmbTemplateContract | denoptim.gui.MolToGraphParametersDialog | private |
| customRulesTabModel | denoptim.gui.CuttingRulesSelectionDialog | private |
| CuttingRulesSelectionDialog(List< CuttingRule > defaultCuttingRules, List< CuttingRule > customCuttingRules, boolean preselectDefault, Component refForPlacement, FragmenterParameters settings) | denoptim.gui.CuttingRulesSelectionDialog | |
| defaultRulesTabModel | denoptim.gui.CuttingRulesSelectionDialog | private |
| escapeCharactersForSMARTSViewer(String smarts) | denoptim.gui.CuttingRulesSelectionDialog | private |
| frgParams | denoptim.gui.CuttingRulesSelectionDialog | protected |
| getEmbeddedRingsContract() | denoptim.gui.MolToGraphParametersDialog | |
| getEmbedRingsInTemplate() | denoptim.gui.MolToGraphParametersDialog | |
| getScaffoldingPolicy() | denoptim.gui.MolToGraphParametersDialog | |
| getTmpFileForCuttingRules() | denoptim.gui.CuttingRulesSelectionDialog | private |
| GUIModalDialog(Component refForPlacement) | denoptim.gui.GUIModalDialog | |
| GUIModalDialog(Component refForPlacement, boolean useExtraButton) | denoptim.gui.GUIModalDialog | |
| initialize(boolean useExtraButton) | denoptim.gui.GUIModalDialog | private |
| lastUsedCutRulFile | denoptim.gui.CuttingRulesSelectionDialog | protected |
| lblScaffoldingPolicy | denoptim.gui.MolToGraphParametersDialog | private |
| lblTemplateContract | denoptim.gui.MolToGraphParametersDialog | private |
| lineEmbTmpl | denoptim.gui.MolToGraphParametersDialog | private |
| lineScaffoldingPolicy | denoptim.gui.MolToGraphParametersDialog | private |
| lineTemplateContract | denoptim.gui.MolToGraphParametersDialog | private |
| MolToGraphParametersDialog(List< CuttingRule > defaultCuttingRules, List< CuttingRule > customCuttingRules, boolean preselectDefault, Component refForPlacement, FragmenterParameters settings) | denoptim.gui.MolToGraphParametersDialog | |
| nextWrittenCutRulFile | denoptim.gui.CuttingRulesSelectionDialog | private |
| pnlControls | denoptim.gui.GUIModalDialog | private |
| preferredHeight | denoptim.gui.CuttingRulesSelectionDialog | protected |
| rdbEmbTmpl | denoptim.gui.MolToGraphParametersDialog | private |
| rdbUseCustom | denoptim.gui.CuttingRulesSelectionDialog | private |
| rdbUseDefault | denoptim.gui.CuttingRulesSelectionDialog | private |
| result | denoptim.gui.GUIModalDialog | protected |
| saveResults() | denoptim.gui.MolToGraphParametersDialog | protected |
| serialVersionUID | denoptim.gui.MolToGraphParametersDialog | privatestatic |
| showDialog() | denoptim.gui.GUIModalDialog | |
| strFieldSize | denoptim.gui.CuttingRulesSelectionDialog | protected |
| txtLinearity | denoptim.gui.CuttingRulesSelectionDialog | protected |
| txtScaffoldingPolicy | denoptim.gui.MolToGraphParametersDialog | private |