| apClass | denoptim.graph.AttachmentPoint | private |
| atomPositionNumber | denoptim.graph.AttachmentPoint | private |
| atomPositionNumberInMol | denoptim.graph.AttachmentPoint | private |
| AttachmentPoint(Vertex owner) | denoptim.graph.AttachmentPoint | |
| AttachmentPoint(Vertex owner, int atomPositionNumber) | denoptim.graph.AttachmentPoint | |
| AttachmentPoint(Vertex owner, int atomPositionNumber, Point3d dirVec) | denoptim.graph.AttachmentPoint | private |
| AttachmentPoint(Vertex owner, int atomPosNum, APClass apClass) | denoptim.graph.AttachmentPoint | |
| AttachmentPoint(Vertex owner, int atomPosNum, Point3d dirVec, APClass apClass) | denoptim.graph.AttachmentPoint | |
| AttachmentPoint(Vertex owner, String str) | denoptim.graph.AttachmentPoint | |
| clone() | denoptim.graph.AttachmentPoint | |
| comparePropertiesTo(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
| compareTo(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
| cutId | denoptim.graph.AttachmentPoint | private |
| dirVec | denoptim.graph.AttachmentPoint | private |
| getAPClass() | denoptim.graph.AttachmentPoint | |
| getAPDefinitionsForSDF(LinkedHashMap< Integer, List< AttachmentPoint > > apsPerIndex) | denoptim.graph.AttachmentPoint | static |
| getAtomPositionNumber() | denoptim.graph.AttachmentPoint | |
| getAtomPositionNumberInMol() | denoptim.graph.AttachmentPoint | |
| getBondType() | denoptim.graph.AttachmentPoint | |
| getCutId() | denoptim.graph.AttachmentPoint | |
| getDirectionVector() | denoptim.graph.AttachmentPoint | |
| getEdgeUser() | denoptim.graph.AttachmentPoint | |
| getEdgeUserThroughout() | denoptim.graph.AttachmentPoint | |
| getEmbeddedAP() | denoptim.graph.AttachmentPoint | |
| getID() | denoptim.graph.AttachmentPoint | |
| getIndexInOwner() | denoptim.graph.AttachmentPoint | |
| getLinkedAP() | denoptim.graph.AttachmentPoint | |
| getLinkedAPThroughout() | denoptim.graph.AttachmentPoint | |
| getOwner() | denoptim.graph.AttachmentPoint | |
| getProperties() | denoptim.graph.AttachmentPoint | |
| getProperty(Object description) | denoptim.graph.AttachmentPoint | |
| getSingleAPStringSDF(boolean isFirst, int srcAtmID) | denoptim.graph.AttachmentPoint | |
| getSingleAPStringSDF(boolean isFirst) | denoptim.graph.AttachmentPoint | |
| hasConnectedSrcAtom(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
| hasSameSrcAtom(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
| id | denoptim.graph.AttachmentPoint | private |
| isAvailable() | denoptim.graph.AttachmentPoint | |
| isAvailableThroughout() | denoptim.graph.AttachmentPoint | |
| isClassEnabled() | denoptim.graph.AttachmentPoint | |
| isSrcInUser() | denoptim.graph.AttachmentPoint | |
| isSrcInUserThroughout() | denoptim.graph.AttachmentPoint | |
| owner | denoptim.graph.AttachmentPoint | private |
| processSdfString(String str) | denoptim.graph.AttachmentPoint | static |
| properties | denoptim.graph.AttachmentPoint | private |
| sameAs(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
| sameAs(AttachmentPoint other, StringBuilder reason) | denoptim.graph.AttachmentPoint | |
| setAPClass(String apClass) | denoptim.graph.AttachmentPoint | |
| setAPClass(APClass apClass) | denoptim.graph.AttachmentPoint | |
| setAtomPositionNumber(int atomPositionNumber) | denoptim.graph.AttachmentPoint | |
| setAtomPositionNumberInMol(int atomPositionNumberInMol) | denoptim.graph.AttachmentPoint | |
| setCutId(int id) | denoptim.graph.AttachmentPoint | |
| setDirectionVector(Point3d dirVec) | denoptim.graph.AttachmentPoint | |
| setID(int id) | denoptim.graph.AttachmentPoint | |
| setOwner(Vertex owner) | denoptim.graph.AttachmentPoint | |
| setProperty(Object key, Object property) | denoptim.graph.AttachmentPoint | |
| setUser(Edge edge) | denoptim.graph.AttachmentPoint | |
| toString() | denoptim.graph.AttachmentPoint | |
| toStringNoId() | denoptim.graph.AttachmentPoint | |
| user | denoptim.graph.AttachmentPoint | private |