apClass | denoptim.graph.AttachmentPoint | private |
atomPositionNumber | denoptim.graph.AttachmentPoint | private |
atomPositionNumberInMol | denoptim.graph.AttachmentPoint | private |
AttachmentPoint(Vertex owner) | denoptim.graph.AttachmentPoint | |
AttachmentPoint(Vertex owner, int atomPositionNumber) | denoptim.graph.AttachmentPoint | |
AttachmentPoint(Vertex owner, int atomPositionNumber, Point3d dirVec) | denoptim.graph.AttachmentPoint | private |
AttachmentPoint(Vertex owner, int atomPosNum, APClass apClass) | denoptim.graph.AttachmentPoint | |
AttachmentPoint(Vertex owner, int atomPosNum, Point3d dirVec, APClass apClass) | denoptim.graph.AttachmentPoint | |
AttachmentPoint(Vertex owner, String str) | denoptim.graph.AttachmentPoint | |
clone() | denoptim.graph.AttachmentPoint | |
comparePropertiesTo(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
compareTo(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
cutId | denoptim.graph.AttachmentPoint | private |
dirVec | denoptim.graph.AttachmentPoint | private |
getAPClass() | denoptim.graph.AttachmentPoint | |
getAPDefinitionsForSDF(LinkedHashMap< Integer, List< AttachmentPoint > > apsPerIndex) | denoptim.graph.AttachmentPoint | static |
getAtomPositionNumber() | denoptim.graph.AttachmentPoint | |
getAtomPositionNumberInMol() | denoptim.graph.AttachmentPoint | |
getBondType() | denoptim.graph.AttachmentPoint | |
getCutId() | denoptim.graph.AttachmentPoint | |
getDirectionVector() | denoptim.graph.AttachmentPoint | |
getEdgeUser() | denoptim.graph.AttachmentPoint | |
getEdgeUserThroughout() | denoptim.graph.AttachmentPoint | |
getEmbeddedAP() | denoptim.graph.AttachmentPoint | |
getID() | denoptim.graph.AttachmentPoint | |
getIndexInOwner() | denoptim.graph.AttachmentPoint | |
getLinkedAP() | denoptim.graph.AttachmentPoint | |
getLinkedAPThroughout() | denoptim.graph.AttachmentPoint | |
getOwner() | denoptim.graph.AttachmentPoint | |
getProperties() | denoptim.graph.AttachmentPoint | |
getProperty(Object description) | denoptim.graph.AttachmentPoint | |
getSingleAPStringSDF(boolean isFirst, int srcAtmID) | denoptim.graph.AttachmentPoint | |
getSingleAPStringSDF(boolean isFirst) | denoptim.graph.AttachmentPoint | |
hasConnectedSrcAtom(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
hasSameSrcAtom(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
id | denoptim.graph.AttachmentPoint | private |
isAvailable() | denoptim.graph.AttachmentPoint | |
isAvailableThroughout() | denoptim.graph.AttachmentPoint | |
isClassEnabled() | denoptim.graph.AttachmentPoint | |
isSrcInUser() | denoptim.graph.AttachmentPoint | |
isSrcInUserThroughout() | denoptim.graph.AttachmentPoint | |
owner | denoptim.graph.AttachmentPoint | private |
processSdfString(String str) | denoptim.graph.AttachmentPoint | static |
properties | denoptim.graph.AttachmentPoint | private |
sameAs(AttachmentPoint other) | denoptim.graph.AttachmentPoint | |
sameAs(AttachmentPoint other, StringBuilder reason) | denoptim.graph.AttachmentPoint | |
setAPClass(String apClass) | denoptim.graph.AttachmentPoint | |
setAPClass(APClass apClass) | denoptim.graph.AttachmentPoint | |
setAtomPositionNumber(int atomPositionNumber) | denoptim.graph.AttachmentPoint | |
setAtomPositionNumberInMol(int atomPositionNumberInMol) | denoptim.graph.AttachmentPoint | |
setCutId(int id) | denoptim.graph.AttachmentPoint | |
setDirectionVector(Point3d dirVec) | denoptim.graph.AttachmentPoint | |
setID(int id) | denoptim.graph.AttachmentPoint | |
setOwner(Vertex owner) | denoptim.graph.AttachmentPoint | |
setProperty(Object key, Object property) | denoptim.graph.AttachmentPoint | |
setUser(Edge edge) | denoptim.graph.AttachmentPoint | |
toString() | denoptim.graph.AttachmentPoint | |
toStringNoId() | denoptim.graph.AttachmentPoint | |
user | denoptim.graph.AttachmentPoint | private |