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DENOPTIM
denoptim.utils.DummyAtomHandler Member List

This is the complete list of members for denoptim.utils.DummyAtomHandler, including all inherited members.

addDummiesOnLinearities(Fragment frag, double angLim)denoptim.utils.DummyAtomHandlerstatic
DummyAtomHandler(String elm, Logger logger)denoptim.utils.DummyAtomHandler
elmdenoptim.utils.DummyAtomHandlerprivate
exploreConnectedToAtom(IAtom seed, List< IAtom > inList, IAtomContainer mol, List< Boolean > doneFlag)denoptim.utils.DummyAtomHandlerprivate
getDummyInSafeDirection(IAtom atmA, Point3d pB, IAtomContainer mol, List< Point3d > placesToAvoid)denoptim.utils.DummyAtomHandlerstatic
getFlagsVector(int size)denoptim.utils.DummyAtomHandlerprivate
getSDFAtomNumber(IAtomContainer mol, IAtom atm)denoptim.utils.DummyAtomHandlerprivatestatic
loggerdenoptim.utils.DummyAtomHandlerprivate
recNumdenoptim.utils.DummyAtomHandlerpackage
removeDummy(IAtomContainer mol)denoptim.utils.DummyAtomHandler
removeDummyInHapto(IAtomContainer mol)denoptim.utils.DummyAtomHandler