denoptim.utils.AtomOrganizer Member List

This is the complete list of members for denoptim.utils.AtomOrganizer, including all inherited members.

addAtomToLayer(int atmidx, int ap, int layer, int doneFlag)	denoptim.utils.AtomOrganizer	private
atomOrders	denoptim.utils.AtomOrganizer	private
AtomOrganizer()	denoptim.utils.AtomOrganizer
branchOrienterReordering(int seed, int flag, IAtomContainer mol)	denoptim.utils.AtomOrganizer	private
deleteAtomsFlag(int flagID)	denoptim.utils.AtomOrganizer	private
exploreMolecule(int seed, int flag, IAtomContainer mol, int ap)	denoptim.utils.AtomOrganizer	private
flags	denoptim.utils.AtomOrganizer	private
getFreeAtomsFlag(IAtomContainer mol)	denoptim.utils.AtomOrganizer	private
getNewToOldOrder(int seed)	denoptim.utils.AtomOrganizer
getOldToNewOrder(int seed)	denoptim.utils.AtomOrganizer
layerOrientedReordering(int seed, int flag, IAtomContainer mol)	denoptim.utils.AtomOrganizer	private
layers	denoptim.utils.AtomOrganizer	private
lidx	denoptim.utils.AtomOrganizer	private
makeReorderedCopy(IAtomContainer original, List< Integer > newToOldOrder, List< Integer > oldToNewOrder)	denoptim.utils.AtomOrganizer	static
oldToNewOrder	denoptim.utils.AtomOrganizer	private
prioritizeAtomList(List< IAtom > inList, IAtomContainer mol)	denoptim.utils.AtomOrganizer	private
processAtom(int atmidx, int ap, int doneFlag)	denoptim.utils.AtomOrganizer	private
reorderStartingFrom(int seed, IAtomContainer mol)	denoptim.utils.AtomOrganizer
scheme	denoptim.utils.AtomOrganizer	private
setScheme(int scheme)	denoptim.utils.AtomOrganizer