denoptim.programs.mol2graph.Mol2GraphParameters Member List

This is the complete list of members for denoptim.programs.mol2graph.Mol2GraphParameters, including all inherited members.

checkOtherParameters()	denoptim.programs.RunTimeParameters	protected
checkParameters()	denoptim.programs.mol2graph.Mol2GraphParameters
containsParameters(ParametersType type)	denoptim.programs.RunTimeParameters
embedRingsInTemplate()	denoptim.programs.mol2graph.Mol2GraphParameters
ensureFileExists(String pathname)	denoptim.programs.RunTimeParameters	protected
ensureFileExistsIfSet(String pathname)	denoptim.programs.RunTimeParameters	protected
ensureFragmenterParams()	denoptim.programs.mol2graph.Mol2GraphParameters	private
ensureFragSpareParams()	denoptim.programs.mol2graph.Mol2GraphParameters	private
ensureInRange(String paramName, int value, int min, int max, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureIsPositive(String paramName, int value, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureIsPositiveOrZero(String paramName, int value, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureNotNull(String paramName, String param, String paramKey)	denoptim.programs.RunTimeParameters	protected
getCuttingRules()	denoptim.programs.mol2graph.Mol2GraphParameters
getEmbeddedRingsContract()	denoptim.programs.mol2graph.Mol2GraphParameters
getFragmentSpace()	denoptim.programs.mol2graph.Mol2GraphParameters
getInputMol(int i)	denoptim.programs.mol2graph.Mol2GraphParameters
getInputMolsCount()	denoptim.programs.mol2graph.Mol2GraphParameters
getInstanceFor(ParametersType paramType)	denoptim.programs.RunTimeParameters	privatestatic
getLinearAngleLimit()	denoptim.programs.mol2graph.Mol2GraphParameters
getLogFilePathname()	denoptim.programs.RunTimeParameters
getLogger()	denoptim.programs.RunTimeParameters
getOutFile()	denoptim.programs.mol2graph.Mol2GraphParameters
getOutFormat()	denoptim.programs.mol2graph.Mol2GraphParameters
getParameters(ParametersType type)	denoptim.programs.RunTimeParameters
getPrintedList()	denoptim.programs.mol2graph.Mol2GraphParameters
getRandomizer()	denoptim.programs.RunTimeParameters
getRandomSeed()	denoptim.programs.RunTimeParameters
getScaffoldingPolicy()	denoptim.programs.mol2graph.Mol2GraphParameters
getVerbosity()	denoptim.programs.RunTimeParameters
getWorkDirectory()	denoptim.programs.RunTimeParameters
inFile	denoptim.programs.mol2graph.Mol2GraphParameters	private
inMols	denoptim.programs.mol2graph.Mol2GraphParameters	private
interpretKeyword(String key, String value)	denoptim.programs.mol2graph.Mol2GraphParameters
denoptim::programs::RunTimeParameters.interpretKeyword(String line)	denoptim.programs.RunTimeParameters
isMaster	denoptim.programs.RunTimeParameters	protected
logFile	denoptim.programs.RunTimeParameters	protected
logger	denoptim.programs.RunTimeParameters	private
Mol2GraphParameters()	denoptim.programs.mol2graph.Mol2GraphParameters
NL	denoptim.programs.RunTimeParameters
otherParameters	denoptim.programs.RunTimeParameters	protected
outGraphsFile	denoptim.programs.mol2graph.Mol2GraphParameters	private
outGraphsFormat	denoptim.programs.mol2graph.Mol2GraphParameters	private
paramType	denoptim.programs.RunTimeParameters	private
paramTypeName()	denoptim.programs.RunTimeParameters
printParameters()	denoptim.programs.RunTimeParameters
processOtherParameters()	denoptim.programs.RunTimeParameters	protected
processParameters()	denoptim.programs.mol2graph.Mol2GraphParameters
readParameterFile(String infile)	denoptim.programs.RunTimeParameters
readParameterLine(String line)	denoptim.programs.RunTimeParameters
readYesNoTrueFalse(String s)	denoptim.programs.RunTimeParameters	static
rng	denoptim.programs.RunTimeParameters	private
RunTimeParameters(ParametersType paramType)	denoptim.programs.RunTimeParameters
setLogFilePathname(String pathname)	denoptim.programs.RunTimeParameters
setLogger(Logger logger)	denoptim.programs.RunTimeParameters	private
setParameters(RunTimeParameters otherParams)	denoptim.programs.RunTimeParameters
setRandomizer(Randomizer rng)	denoptim.programs.RunTimeParameters
setVerbosity(int l)	denoptim.programs.RunTimeParameters
setWorkDirectory(String pathname)	denoptim.programs.RunTimeParameters
startConsoleLogger(String loggerIdentifier)	denoptim.programs.RunTimeParameters
startProgramSpecificLogger(String loggerIdentifier)	denoptim.programs.RunTimeParameters
startProgramSpecificLogger(String loggerIdentifier, boolean toLogFile)	denoptim.programs.RunTimeParameters
startRandomizer()	denoptim.programs.RunTimeParameters
startRandomizer(long seed)	denoptim.programs.RunTimeParameters
verbosity	denoptim.programs.RunTimeParameters	protected
verbosityTologLevel()	denoptim.programs.RunTimeParameters	private
workDir	denoptim.programs.RunTimeParameters	protected