This is the complete list of members for denoptim.molecularmodeling.ThreeDimTreeBuilder, including all inherited members.

alignIn3D	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
append3DFragmentsDisconnected(Vertex rootVrtx, IAtomContainer mol, DGraph graph, boolean removeUsedRCAs, boolean rebuild, Map< Long, ArrayList< AttachmentPoint > > apsPerVertexId, Map< Edge, ArrayList< AttachmentPoint > > apsPerEdge, Map< IAtom, ArrayList< AttachmentPoint > > apsPerAtom, Map< IBond, ArrayList< AttachmentPoint > > apsPerBond)	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
append3DFragmentsViaEdges(IAtomContainer mol, DGraph graph, int idSrcAtmA, Point3d srcApA, Point3d trgApA, Edge edge, boolean removeUsedRCAs, boolean rebuild, Map< Long, ArrayList< AttachmentPoint > > apsPerVertexId, Map< Edge, ArrayList< AttachmentPoint > > apsPerEdge, Map< IAtom, ArrayList< AttachmentPoint > > apsPerAtom, Map< IBond, ArrayList< AttachmentPoint > > apsPerBond)	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
builder	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
convertGraphTo3DAtomContainer(DGraph graph)	denoptim.molecularmodeling.ThreeDimTreeBuilder
convertGraphTo3DAtomContainer(DGraph graph, boolean removeUsedRCAs)	denoptim.molecularmodeling.ThreeDimTreeBuilder
convertGraphTo3DAtomContainer(DGraph graph, boolean removeUsedRCAs, boolean setCDKRequirements, boolean rebuild)	denoptim.molecularmodeling.ThreeDimTreeBuilder
getRandomPoint(IAtomContainer mol)	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
logger	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
maxCoord	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
NL	denoptim.molecularmodeling.ThreeDimTreeBuilder	privatestatic
randomizer	denoptim.molecularmodeling.ThreeDimTreeBuilder	private
setAlignBBsIn3D(boolean align)	denoptim.molecularmodeling.ThreeDimTreeBuilder
ThreeDimTreeBuilder(Logger logger, Randomizer randomizer)	denoptim.molecularmodeling.ThreeDimTreeBuilder