denoptim.integration.tinker.TinkerUtils Member List

This is the complete list of members for denoptim.integration.tinker.TinkerUtils, including all inherited members.

countPredefinedNeighbours(int i, IAtom a, IAtomContainer mol)	denoptim.integration.tinker.TinkerUtils	privatestatic
debug	denoptim.integration.tinker.TinkerUtils	privatestatic
ensureOutputExistsOrRelayError(String outputPathName, String logPathName, String taskName)	denoptim.integration.tinker.TinkerUtils	static
getFirstRefAtomId(int i1, IAtomContainer mol)	denoptim.integration.tinker.TinkerUtils	privatestatic
getICFromIAC(IAtomContainer mol, HashMap< String, Integer > tMap)	denoptim.integration.tinker.TinkerUtils	static
getNameLastCycleFile(String workDir, String fname, String tinkerLog, String pattern)	denoptim.integration.tinker.TinkerUtils	static
getSecondRefAtomId(int i1, int i2, IAtomContainer mol)	denoptim.integration.tinker.TinkerUtils	privatestatic
getThirdRefAtomId(int i1, int i2, int i3, IAtomContainer mol, TinkerMolecule tm)	denoptim.integration.tinker.TinkerUtils	privatestatic
NL	denoptim.integration.tinker.TinkerUtils	privatestatic
readPSSROTOutput(String filename)	denoptim.integration.tinker.TinkerUtils	static
readPSSROTParams(String filename, ArrayList< String > initPars, ArrayList< String > restPars)	denoptim.integration.tinker.TinkerUtils	static
readTinkerAtomTypes(String filename)	denoptim.integration.tinker.TinkerUtils	static
readTinkerIC(String filename)	denoptim.integration.tinker.TinkerUtils	static
readTinkerXYZ(String filename)	denoptim.integration.tinker.TinkerUtils	static
setTinkerTypes(TinkerMolecule tmol, HashMap< String, Integer > tMap)	denoptim.integration.tinker.TinkerUtils	static
writeIC(String filename, TinkerMolecule tmol)	denoptim.integration.tinker.TinkerUtils	static