This is the complete list of members for denoptim.integration.tinker.TinkerMolecule, including all inherited members.

addAtom(TinkerAtom ta)	denoptim.integration.tinker.TinkerMolecule
addBond(int a1, int a2)	denoptim.integration.tinker.TinkerMolecule
addMolecule(TinkerMolecule tmol2)	denoptim.integration.tinker.TinkerMolecule
clone()	denoptim.integration.tinker.TinkerMolecule
debug	denoptim.integration.tinker.TinkerMolecule	private
deepCopy()	denoptim.integration.tinker.TinkerMolecule
getAtom(int pos)	denoptim.integration.tinker.TinkerMolecule
getAtoms()	denoptim.integration.tinker.TinkerMolecule
getBondAdd()	denoptim.integration.tinker.TinkerMolecule
getBondDel()	denoptim.integration.tinker.TinkerMolecule
getConnectedAtoms(int pos)	denoptim.integration.tinker.TinkerMolecule
getLastAtomNumber()	denoptim.integration.tinker.TinkerMolecule
getName()	denoptim.integration.tinker.TinkerMolecule
isConnected(int atm1, int atm2)	denoptim.integration.tinker.TinkerMolecule
isTorsionUsed(int t1, int t2)	denoptim.integration.tinker.TinkerMolecule
lstAtoms	denoptim.integration.tinker.TinkerMolecule	private
molName	denoptim.integration.tinker.TinkerMolecule	package
printIC()	denoptim.integration.tinker.TinkerMolecule
set3DCoordinates(ArrayList< double[]> coords)	denoptim.integration.tinker.TinkerMolecule
setAtoms(ArrayList< TinkerAtom > lstAtoms)	denoptim.integration.tinker.TinkerMolecule
setBondPairs(ArrayList< int[]> zdel, ArrayList< int[]> zadd)	denoptim.integration.tinker.TinkerMolecule
setName(String molName)	denoptim.integration.tinker.TinkerMolecule
TinkerMolecule()	denoptim.integration.tinker.TinkerMolecule
TinkerMolecule(String molName, ArrayList< int[]> zadd, ArrayList< int[]> zdel, ArrayList< TinkerAtom > lstAtoms)	denoptim.integration.tinker.TinkerMolecule
zadd	denoptim.integration.tinker.TinkerMolecule	package
zdel	denoptim.integration.tinker.TinkerMolecule	package