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DENOPTIM
denoptim.graph.rings.RingSizeManager Member List

This is the complete list of members for denoptim.graph.rings.RingSizeManager, including all inherited members.

addRingClosingBond(Vertex vI, Vertex vJ)denoptim.graph.rings.RingSizeManager
calculateCompatibilityOfAllRCAPairs()denoptim.graph.rings.RingSizeManagerprivate
compatibilityOfPairsdenoptim.graph.rings.RingSizeManagerprivate
donedenoptim.graph.rings.RingSizeManagerprivate
evaluateRCVPair(Vertex vI, Vertex vJ, FragmentSpace fragSpace)denoptim.graph.rings.RingSizeManagerprivate
fillTopologicalMatrix()denoptim.graph.rings.RingSizeManagerprivate
fragSpacedenoptim.graph.rings.RingSizeManagerprivate
getCompatibilityOfPair(Vertex vI, Vertex vJ)denoptim.graph.rings.RingSizeManager
getRSBiasedListOfCandidates()denoptim.graph.rings.RingSizeManager
getRSBiasedListOfCandidates(Vertex vI)denoptim.graph.rings.RingSizeManager
initialize(IAtomContainer origMol, DGraph graph)denoptim.graph.rings.RingSizeManager
loggerdenoptim.graph.rings.RingSizeManagerprivate
lstVertdenoptim.graph.rings.RingSizeManagerprivate
moldenoptim.graph.rings.RingSizeManagerprivate
NLdenoptim.graph.rings.RingSizeManagerprivatestatic
ringSizeBiasdenoptim.graph.rings.RingSizeManagerprivate
RingSizeManager(FragmentSpace fragSpace, RingClosureParameters rcParams)denoptim.graph.rings.RingSizeManager
settingsdenoptim.graph.rings.RingSizeManagerprivate
setVertexAsDone(Vertex v)denoptim.graph.rings.RingSizeManager
szdenoptim.graph.rings.RingSizeManagerprivate
topoMatdenoptim.graph.rings.RingSizeManagerprivate
vIdToAtmIddenoptim.graph.rings.RingSizeManagerprivate
weigthsdenoptim.graph.rings.RingSizeManagerprivate