$darkmode
DENOPTIM
denoptim.graph.rings.PathSubGraph Member List

This is the complete list of members for denoptim.graph.rings.PathSubGraph, including all inherited members.

allPossibleChainIDsdenoptim.graph.rings.PathSubGraphprivate
atmNumStrdenoptim.graph.rings.PathSubGraphprivate
atomsPathVAVBdenoptim.graph.rings.PathSubGraphprivate
bondsPathVAVBdenoptim.graph.rings.PathSubGraphprivate
chainIDdenoptim.graph.rings.PathSubGraphprivate
debugdenoptim.graph.rings.PathSubGraphprivate
dihedralRefPtsdenoptim.graph.rings.PathSubGraphprivate
edgesPathVAVBdenoptim.graph.rings.PathSubGraphprivate
findAtomPath(IAtomContainer iac)denoptim.graph.rings.PathSubGraphstatic
findPath(Vertex from, Vertex to)denoptim.graph.rings.PathSubGraphstatic
findPath(Vertex from, Vertex to, Set< Long > visited)denoptim.graph.rings.PathSubGraphprivatestatic
getAllAlternativeChainIDs()denoptim.graph.rings.PathSubGraph
getAtomPath()denoptim.graph.rings.PathSubGraph
getAtomRefStr()denoptim.graph.rings.PathSubGraph
getBondPath()denoptim.graph.rings.PathSubGraph
getChainID()denoptim.graph.rings.PathSubGraph
getDihedralRefPoints()denoptim.graph.rings.PathSubGraph
getEdgesPath()denoptim.graph.rings.PathSubGraph
getGraph()denoptim.graph.rings.PathSubGraph
getHeadVertex()denoptim.graph.rings.PathSubGraph
getMolecularRepresentation()denoptim.graph.rings.PathSubGraph
getPathLength()denoptim.graph.rings.PathSubGraph
getRCC()denoptim.graph.rings.PathSubGraph
getTailVertex()denoptim.graph.rings.PathSubGraph
getVertecesPath()denoptim.graph.rings.PathSubGraph
getVertexIdInPath(IAtom a)denoptim.graph.rings.PathSubGraphprivate
graphdenoptim.graph.rings.PathSubGraphprivate
hasMolecularRepresentation()denoptim.graph.rings.PathSubGraph
hasMolReprdenoptim.graph.rings.PathSubGraphprivate
iacPathVAVBdenoptim.graph.rings.PathSubGraphprivate
makeMolecularRepresentation(IAtomContainer mol, boolean make3D, Logger logger, Randomizer randomizer)denoptim.graph.rings.PathSubGraph
PathSubGraph(Vertex vA, Vertex vB, DGraph molGraph)denoptim.graph.rings.PathSubGraph
rccdenoptim.graph.rings.PathSubGraphprivate
revChainIDdenoptim.graph.rings.PathSubGraphprivate
setRCC(RingClosingConformations rcc)denoptim.graph.rings.PathSubGraph
toString()denoptim.graph.rings.PathSubGraph
turningPointVertdenoptim.graph.rings.PathSubGraphprivate
vAdenoptim.graph.rings.PathSubGraphprivate
vBdenoptim.graph.rings.PathSubGraphprivate
vertPathVAVBdenoptim.graph.rings.PathSubGraphprivate