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DENOPTIM
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This is the complete list of members for denoptim.graph.rings.CyclicGraphHandler, including all inherited members.
checkChelatesGraph(DGraph molGraph, List< Ring > ringsSet) | denoptim.graph.rings.CyclicGraphHandler | |
checkClosabilityOfInterdependentPaths(ArrayList< ObjectPair > lstPairs, Map< IBond, List< PathSubGraph > > interdepPaths, Map< ObjectPair, PathSubGraph > allGoodPaths) | denoptim.graph.rings.CyclicGraphHandler | private |
combineCompatPathSubGraphs(int ii0, ArrayList< Vertex > sortedKeys, Map< Vertex, ArrayList< Vertex > > compatMap, ArrayList< ObjectPair > lstPairs, ArrayList< Long > usedId, Map< ObjectPair, PathSubGraph > allGoodPaths, Map< IBond, List< PathSubGraph > > interdepPaths, ArrayList< List< Ring > > allCombsOfRings) | denoptim.graph.rings.CyclicGraphHandler | private |
CyclicGraphHandler(RingClosureParameters settings, FragmentSpace fragSpace) | denoptim.graph.rings.CyclicGraphHandler | |
fragSpace | denoptim.graph.rings.CyclicGraphHandler | private |
getPossibleCombinationOfRings(IAtomContainer mol, DGraph molGraph) | denoptim.graph.rings.CyclicGraphHandler | |
getRandomCombinationOfRings(IAtomContainer inMol, DGraph molGraph, int maxRingClosures) | denoptim.graph.rings.CyclicGraphHandler | |
hasInterdependentPaths(ArrayList< ObjectPair > lstPairs, Map< IBond, List< PathSubGraph > > interdepPaths) | denoptim.graph.rings.CyclicGraphHandler | private |
logger | denoptim.graph.rings.CyclicGraphHandler | private |
maxLng | denoptim.graph.rings.CyclicGraphHandler | private |
NL | denoptim.graph.rings.CyclicGraphHandler | privatestatic |
recCount | denoptim.graph.rings.CyclicGraphHandler | private |
settings | denoptim.graph.rings.CyclicGraphHandler | private |