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DENOPTIM
denoptim.graph.rings.CyclicGraphHandler Member List

This is the complete list of members for denoptim.graph.rings.CyclicGraphHandler, including all inherited members.

checkChelatesGraph(DGraph molGraph, List< Ring > ringsSet)denoptim.graph.rings.CyclicGraphHandler
checkClosabilityOfInterdependentPaths(ArrayList< ObjectPair > lstPairs, Map< IBond, List< PathSubGraph > > interdepPaths, Map< ObjectPair, PathSubGraph > allGoodPaths)denoptim.graph.rings.CyclicGraphHandlerprivate
combineCompatPathSubGraphs(int ii0, ArrayList< Vertex > sortedKeys, Map< Vertex, ArrayList< Vertex > > compatMap, ArrayList< ObjectPair > lstPairs, ArrayList< Long > usedId, Map< ObjectPair, PathSubGraph > allGoodPaths, Map< IBond, List< PathSubGraph > > interdepPaths, ArrayList< List< Ring > > allCombsOfRings)denoptim.graph.rings.CyclicGraphHandlerprivate
CyclicGraphHandler(RingClosureParameters settings, FragmentSpace fragSpace)denoptim.graph.rings.CyclicGraphHandler
fragSpacedenoptim.graph.rings.CyclicGraphHandlerprivate
getPossibleCombinationOfRings(IAtomContainer mol, DGraph molGraph)denoptim.graph.rings.CyclicGraphHandler
getRandomCombinationOfRings(IAtomContainer inMol, DGraph molGraph, int maxRingClosures)denoptim.graph.rings.CyclicGraphHandler
hasInterdependentPaths(ArrayList< ObjectPair > lstPairs, Map< IBond, List< PathSubGraph > > interdepPaths)denoptim.graph.rings.CyclicGraphHandlerprivate
loggerdenoptim.graph.rings.CyclicGraphHandlerprivate
maxLngdenoptim.graph.rings.CyclicGraphHandlerprivate
NLdenoptim.graph.rings.CyclicGraphHandlerprivatestatic
recCountdenoptim.graph.rings.CyclicGraphHandlerprivate
settingsdenoptim.graph.rings.CyclicGraphHandlerprivate