denoptim.ga.GraphOperations Member List

This is the complete list of members for denoptim.ga.GraphOperations, including all inherited members.

addFusedRing(Vertex vertex, Monitor mnt, boolean force, FragmentSpace fragSpace, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
addRing(Vertex vertex, Monitor mnt, boolean force, FragmentSpace fragSpace, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
applySymmetry(boolean apclassImposed, double symmetryProbability, Randomizer randomizer)	denoptim.ga.GraphOperations	protectedstatic
attachFragmentInClosableChain(Vertex curVertex, int dapidx, DGraph molGraph, ArrayList< Long > addedVertices, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
checkAndAddXoverSites(FragmentSpace fragSpace, List< Vertex > subGraphA, List< Vertex > subGraphB, CrossoverType xoverType, List< XoverSite > collector)	denoptim.ga.GraphOperations	privatestatic
deleteChain(Vertex vertex, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic
deleteFragment(Vertex vertex)	denoptim.ga.GraphOperations	protectedstatic
deleteLink(Vertex vertex, int chosenVrtxIdx, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic
extendGraph(Vertex curVertex, boolean extend, boolean symmetryOnAps, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
extendGraph(Vertex curVrtx, boolean extend, boolean symmetryOnAps, boolean force, int chosenVrtxIdx, int chosenApId, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
extendLink(Vertex vertex, int chosenAPId, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	static
extendLink(Vertex vertex, int chosenAPId, int chosenNewVrtxId, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	static
extendLink(Edge edge, int chosenBBIdx, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	static
getFragmentForClosableChain(Vertex curVertex, int dapidx, DGraph molGraph)	denoptim.ga.GraphOperations	protectedstatic
getFrgApForSrcAp(Vertex curVertex, int dapidx, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic
getFrgApForSrcAp(Vertex curVertex, int dapidx, int chosenVrtxIdx, int chosenApId, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic
getRCVForSrcAp(Vertex curVertex, int dapidx, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic
isCrossoverPossible(Edge eA, Edge eB, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	privatestatic
locateCompatibleXOverPoints(DGraph graphA, DGraph graphB, FragmentSpace fragSpace, int maxSizeXoverSubGraph)	denoptim.ga.GraphOperations	static
performCrossover(XoverSite site, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	static
performMutation(DGraph graph, Monitor mnt, GAParameters settings)	denoptim.ga.GraphOperations	static
performMutation(Vertex vertex, Monitor mnt, GAParameters settings)	denoptim.ga.GraphOperations	static
performMutation(Vertex vertex, MutationType mType, Monitor mnt, GAParameters settings)	denoptim.ga.GraphOperations	static
performMutation(Vertex vertex, MutationType mType, boolean force, int chosenVrtxIdx, int chosenApId, Monitor mnt, GAParameters settings)	denoptim.ga.GraphOperations	static
processCombinationOfEndPoints(Vertex[] pair, List< Vertex[]> cominationOfEnds, List< XoverSite > collector, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	privatestatic
processPermutationOfEndPoints(Vertex[] pair, List< Vertex[]> chosenSequenceOfEndpoints, List< XoverSite > collector, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	privatestatic
rebuildBranch(Vertex vertex, boolean force, int chosenVrtxIdx, int chosenApId, GAParameters settings)	denoptim.ga.GraphOperations	protectedstatic
substituteLink(Vertex vertex, int chosenVrtxIdx, Monitor mnt, FragmentSpace fragSpace)	denoptim.ga.GraphOperations	protectedstatic