denoptim.fragspace.FragmentSpaceParameters Member List

This is the complete list of members for denoptim.fragspace.FragmentSpaceParameters, including all inherited members.

buildingBlocksSpace	denoptim.fragspace.FragmentSpaceParameters	private
cappingLibFile	denoptim.fragspace.FragmentSpaceParameters	protected
checkOtherParameters()	denoptim.programs.RunTimeParameters	protected
checkParameters()	denoptim.fragspace.FragmentSpaceParameters
compMatrixFile	denoptim.fragspace.FragmentSpaceParameters	protected
containsParameters(ParametersType type)	denoptim.programs.RunTimeParameters
enforceSymmetry	denoptim.fragspace.FragmentSpaceParameters	protected
enforceSymmetry()	denoptim.fragspace.FragmentSpaceParameters
ensureFileExists(String pathname)	denoptim.programs.RunTimeParameters	protected
ensureFileExistsIfSet(String pathname)	denoptim.programs.RunTimeParameters	protected
ensureInRange(String paramName, int value, int min, int max, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureIsPositive(String paramName, int value, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureIsPositiveOrZero(String paramName, int value, String paramKey)	denoptim.programs.RunTimeParameters	protected
ensureNotNull(String paramName, String param, String paramKey)	denoptim.programs.RunTimeParameters	protected
fragmentLibFile	denoptim.fragspace.FragmentSpaceParameters	protected
FragmentSpaceParameters(ParametersType paramType)	denoptim.fragspace.FragmentSpaceParameters	private
FragmentSpaceParameters()	denoptim.fragspace.FragmentSpaceParameters
FragmentSpaceParameters(FragmentSpace fs)	denoptim.fragspace.FragmentSpaceParameters
getFragmentSpace()	denoptim.fragspace.FragmentSpaceParameters
getInstanceFor(ParametersType paramType)	denoptim.programs.RunTimeParameters	privatestatic
getLogFilePathname()	denoptim.programs.RunTimeParameters
getLogger()	denoptim.programs.RunTimeParameters
getMaxHeavyAtom()	denoptim.fragspace.FragmentSpaceParameters
getMaxMW()	denoptim.fragspace.FragmentSpaceParameters
getMaxRotatableBond()	denoptim.fragspace.FragmentSpaceParameters
getParameters(ParametersType type)	denoptim.programs.RunTimeParameters
getPathnameToAppendedFragments()	denoptim.fragspace.FragmentSpaceParameters
getPathnameToAppendedScaffolds()	denoptim.fragspace.FragmentSpaceParameters
getPrintedList()	denoptim.fragspace.FragmentSpaceParameters
getRandomizer()	denoptim.programs.RunTimeParameters
getRandomSeed()	denoptim.programs.RunTimeParameters
getRotSpaceDefFile()	denoptim.fragspace.FragmentSpaceParameters
getVerbosity()	denoptim.programs.RunTimeParameters
getWorkDirectory()	denoptim.programs.RunTimeParameters
interpretKeyword(String key, String value)	denoptim.fragspace.FragmentSpaceParameters
denoptim::programs::RunTimeParameters.interpretKeyword(String line)	denoptim.programs.RunTimeParameters
isMaster	denoptim.programs.RunTimeParameters	protected
logFile	denoptim.programs.RunTimeParameters	protected
logger	denoptim.programs.RunTimeParameters	private
maxHeavyAtom	denoptim.fragspace.FragmentSpaceParameters	protected
maxMW	denoptim.fragspace.FragmentSpaceParameters	protected
maxRotatableBond	denoptim.fragspace.FragmentSpaceParameters	protected
NL	denoptim.programs.RunTimeParameters
otherParameters	denoptim.programs.RunTimeParameters	protected
paramType	denoptim.programs.RunTimeParameters	private
paramTypeName()	denoptim.programs.RunTimeParameters
printParameters()	denoptim.programs.RunTimeParameters
processOtherParameters()	denoptim.programs.RunTimeParameters	protected
processParameters()	denoptim.fragspace.FragmentSpaceParameters
rcCompMatrixFile	denoptim.fragspace.FragmentSpaceParameters	protected
readParameterFile(String infile)	denoptim.programs.RunTimeParameters
readParameterLine(String line)	denoptim.programs.RunTimeParameters
readYesNoTrueFalse(String s)	denoptim.programs.RunTimeParameters	static
rng	denoptim.programs.RunTimeParameters	private
rotBndsFile	denoptim.fragspace.FragmentSpaceParameters	protected
RunTimeParameters(ParametersType paramType)	denoptim.programs.RunTimeParameters
scaffoldLibFile	denoptim.fragspace.FragmentSpaceParameters	protected
setFragmentSpace(FragmentSpace fragmentSpace)	denoptim.fragspace.FragmentSpaceParameters
setLogFilePathname(String pathname)	denoptim.programs.RunTimeParameters
setLogger(Logger logger)	denoptim.programs.RunTimeParameters	private
setParameters(RunTimeParameters otherParams)	denoptim.programs.RunTimeParameters
setRandomizer(Randomizer rng)	denoptim.programs.RunTimeParameters
setVerbosity(int l)	denoptim.programs.RunTimeParameters
setWorkDirectory(String pathname)	denoptim.programs.RunTimeParameters
startConsoleLogger(String loggerIdentifier)	denoptim.programs.RunTimeParameters
startProgramSpecificLogger(String loggerIdentifier)	denoptim.programs.RunTimeParameters
startProgramSpecificLogger(String loggerIdentifier, boolean toLogFile)	denoptim.programs.RunTimeParameters
startRandomizer()	denoptim.programs.RunTimeParameters
startRandomizer(long seed)	denoptim.programs.RunTimeParameters
symmConstraintsMap	denoptim.fragspace.FragmentSpaceParameters	private
symmetryConstraints	denoptim.fragspace.FragmentSpaceParameters	protected
symmetryConstraints()	denoptim.fragspace.FragmentSpaceParameters
verbosity	denoptim.programs.RunTimeParameters	protected
verbosityTologLevel()	denoptim.programs.RunTimeParameters	private
workDir	denoptim.programs.RunTimeParameters	protected