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DENOPTIM
denoptim.fragmenter.ParallelFragmentationAlgorithm Member List

This is the complete list of members for denoptim.fragmenter.ParallelFragmentationAlgorithm, including all inherited members.

allTasksCompleted()denoptim.task.ParallelAsynchronousTaskExecutorprotected
cleanup()denoptim.task.ParallelAsynchronousTaskExecutorprivate
cleanupCompleted()denoptim.task.ParallelAsynchronousTaskExecutorprivate
createAndSubmitTasks()denoptim.fragmenter.ParallelFragmentationAlgorithmprotected
doPostFlightOperations()denoptim.fragmenter.ParallelFragmentationAlgorithmprotected
doPreFlightOperations()denoptim.fragmenter.ParallelFragmentationAlgorithmprotected
futuresdenoptim.task.ParallelAsynchronousTaskExecutorprivate
getExceptionFromSubTask()denoptim.task.ParallelAsynchronousTaskExecutorprotected
getFilesCollectingIsomorphicFamilyChampions(File workDir)denoptim.fragmenter.ParallelFragmentationAlgorithmprotectedstatic
getFormulaForMol(IAtomContainer mol, int index, LinkedHashMap< String, String > formulae)denoptim.fragmenter.ParallelFragmentationAlgorithmprivatestatic
getStructureFileNameBatch(FragmenterParameters settings, int i)denoptim.fragmenter.ParallelFragmentationAlgorithmpackagestatic
loggerdenoptim.task.ParallelAsynchronousTaskExecutorprivate
numThreadsdenoptim.task.ParallelAsynchronousTaskExecutorprivate
ParallelAsynchronousTaskExecutor(int numberOfTasks, Logger logger)denoptim.task.ParallelAsynchronousTaskExecutor
ParallelFragmentationAlgorithm(FragmenterParameters settings)denoptim.fragmenter.ParallelFragmentationAlgorithm
resultsdenoptim.task.ParallelAsynchronousTaskExecutorprotected
run()denoptim.task.ParallelAsynchronousTaskExecutor
settingsdenoptim.fragmenter.ParallelFragmentationAlgorithmprivate
splitInputForThreads(FragmenterParameters settings, IteratingAtomContainerReader reader)denoptim.fragmenter.ParallelFragmentationAlgorithmpackagestatic
stopRun()denoptim.task.ParallelAsynchronousTaskExecutor
structuresdenoptim.fragmenter.ParallelFragmentationAlgorithmprivate
submitTask(Task task, String logFilePathname)denoptim.task.ParallelAsynchronousTaskExecutorprotected
submitteddenoptim.task.ParallelAsynchronousTaskExecutorprivate
subtaskHasException()denoptim.task.ParallelAsynchronousTaskExecutorprotected
thrownByTaskdenoptim.task.ParallelAsynchronousTaskExecutorprivate
tpedenoptim.task.ParallelAsynchronousTaskExecutorpackage