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DENOPTIM
denoptim.fragmenter.ConformerExtractorTask Member List

This is the complete list of members for denoptim.fragmenter.ConformerExtractorTask, including all inherited members.

call()denoptim.fragmenter.ConformerExtractorTask
collectClusterableFragmentsFromFile()denoptim.fragmenter.ConformerExtractorTaskprivate
completeddenoptim.task.Taskprotected
ConformerExtractorTask(List< Vertex > isomorphicFamily, FragmenterParameters settings)denoptim.fragmenter.ConformerExtractorTask
ConformerExtractorTask(Vertex oldChampions, FragmenterParameters settings)denoptim.fragmenter.ConformerExtractorTask
errMsgdenoptim.task.Taskprotected
extractClusterableFragments(Iterator< IAtomContainer > reader, String isomorphicFamilyId, Logger logger)denoptim.fragmenter.ConformerExtractorTaskstatic
foundException()denoptim.task.Task
getChosenFragPathname(FragmenterParameters settings, String isomorphicFamilyId)denoptim.fragmenter.ConformerExtractorTaskpackagestatic
getClusterCentroidsPathname(FragmenterParameters settings, String isomorphicFamilyId)denoptim.fragmenter.ConformerExtractorTaskpackagestatic
getClusterPathname(FragmenterParameters settings, String isomorphicFamilyId, int i)denoptim.fragmenter.ConformerExtractorTaskpackagestatic
getErrorMessage()denoptim.task.Task
getException()denoptim.task.Task
getId()denoptim.task.Task
getLogFilePathname()denoptim.fragmenter.ConformerExtractorTask
getResultFile()denoptim.fragmenter.ConformerExtractorTask
hasExceptiondenoptim.task.Taskprotected
iddenoptim.task.Taskprotected
isCompleted()denoptim.task.Task
isoFamMembersFiledenoptim.fragmenter.ConformerExtractorTaskprivate
isomorphicFamilyIddenoptim.fragmenter.ConformerExtractorTaskprivate
lockdenoptim.task.Task
logFilePathnamedenoptim.fragmenter.ConformerExtractorTaskprivate
loggerdenoptim.fragmenter.ConformerExtractorTaskprivate
NLdenoptim.task.Taskprotected
notifyGlobalTaskManagerdenoptim.task.Taskprotected
populateListOfClusterizableFragments(List< ClusterableFragment > sample, Fragment frag, Logger logger, String fragId)denoptim.fragmenter.ConformerExtractorTaskstatic
processHandlerdenoptim.task.Taskprotected
resultsdenoptim.fragmenter.ConformerExtractorTaskprotected
sampledenoptim.fragmenter.ConformerExtractorTaskprivate
SEPdenoptim.task.Taskprotected
setNotify(boolean notify)denoptim.task.Task
settingsdenoptim.fragmenter.ConformerExtractorTaskprotected
setVerbosity(int verbosity)denoptim.task.Task
setWorkSpace(File workDir)denoptim.task.Task
stopTask()denoptim.task.Task
Task(final int id)denoptim.task.Task
thrownExcdenoptim.task.Taskprotected
toString()denoptim.task.Task
verbositydenoptim.task.Taskprotected
workDirdenoptim.task.Taskprotected