| call() | denoptim.fragmenter.ConformerExtractorTask | |
| collectClusterableFragmentsFromFile() | denoptim.fragmenter.ConformerExtractorTask | private |
| completed | denoptim.task.Task | protected |
| ConformerExtractorTask(List< Vertex > isomorphicFamily, FragmenterParameters settings) | denoptim.fragmenter.ConformerExtractorTask | |
| ConformerExtractorTask(Vertex oldChampions, FragmenterParameters settings) | denoptim.fragmenter.ConformerExtractorTask | |
| errMsg | denoptim.task.Task | protected |
| extractClusterableFragments(Iterator< IAtomContainer > reader, String isomorphicFamilyId, Logger logger) | denoptim.fragmenter.ConformerExtractorTask | static |
| foundException() | denoptim.task.Task | |
| getChosenFragPathname(FragmenterParameters settings, String isomorphicFamilyId) | denoptim.fragmenter.ConformerExtractorTask | packagestatic |
| getClusterCentroidsPathname(FragmenterParameters settings, String isomorphicFamilyId) | denoptim.fragmenter.ConformerExtractorTask | packagestatic |
| getClusterPathname(FragmenterParameters settings, String isomorphicFamilyId, int i) | denoptim.fragmenter.ConformerExtractorTask | packagestatic |
| getErrorMessage() | denoptim.task.Task | |
| getException() | denoptim.task.Task | |
| getId() | denoptim.task.Task | |
| getLogFilePathname() | denoptim.fragmenter.ConformerExtractorTask | |
| getResultFile() | denoptim.fragmenter.ConformerExtractorTask | |
| hasException | denoptim.task.Task | protected |
| id | denoptim.task.Task | protected |
| isCompleted() | denoptim.task.Task | |
| isoFamMembersFile | denoptim.fragmenter.ConformerExtractorTask | private |
| isomorphicFamilyId | denoptim.fragmenter.ConformerExtractorTask | private |
| lock | denoptim.task.Task | |
| logFilePathname | denoptim.fragmenter.ConformerExtractorTask | private |
| logger | denoptim.fragmenter.ConformerExtractorTask | private |
| NL | denoptim.task.Task | protected |
| notifyGlobalTaskManager | denoptim.task.Task | protected |
| populateListOfClusterizableFragments(List< ClusterableFragment > sample, Fragment frag, Logger logger, String fragId) | denoptim.fragmenter.ConformerExtractorTask | static |
| processHandler | denoptim.task.Task | protected |
| results | denoptim.fragmenter.ConformerExtractorTask | protected |
| sample | denoptim.fragmenter.ConformerExtractorTask | private |
| SEP | denoptim.task.Task | protected |
| setNotify(boolean notify) | denoptim.task.Task | |
| settings | denoptim.fragmenter.ConformerExtractorTask | protected |
| setVerbosity(int verbosity) | denoptim.task.Task | |
| setWorkSpace(File workDir) | denoptim.task.Task | |
| stopTask() | denoptim.task.Task | |
| Task(final int id) | denoptim.task.Task | |
| thrownExc | denoptim.task.Task | protected |
| toString() | denoptim.task.Task | |
| verbosity | denoptim.task.Task | protected |
| workDir | denoptim.task.Task | protected |